Rh7DG249100

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000519
Physical Location & Seq
Forward (+)
25781263 .. 25781490
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG249100.1

Sequence Viewer

Length: 228 bp
ATGCAAGACTATTCCAATCTGGAATTTGGGAACATAATTGATGATATTCGAATAGGGCTGCAACATAATGCAGAAATCTCTATCCAGCACATAGCGAGAACTGCCAATGCAGTGGCTCATAGATTAGCTAGTGAAGCTTATGAATCTGTGGAAAGTATAGATTGGCAGGGCAGTGCTCCTGAAATACTTAGAGATGTTCTGAGTTACGATTGTAATCCTATTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

75

Amino Acids

8.37

Weight (kDa)

4.41

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 23
AluBI AGCT 2 cut(s) 128, 137
AluI AGCT 2 cut(s) 128, 137
Alw21I GWGCWC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 23
AsuII TTCGAA 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 45
BfaI CTAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 49
BsaBI GATNNNNATC 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 213
BseJI GATNNNNATC 1 cut(s) 213
BseMII CTCAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 178
Bsp119I TTCGAA 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 188, 200, 225
BstMWI GCNNNNNNNGC 2 cut(s) 101, 134
BstV1I GCAGC 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 112
BtsI GCAGTG 2 cut(s) 117, 178
BtsIMutI CAGTG 2 cut(s) 117, 178
CviJI RGCY 4 cut(s) 58, 116, 128, 137
CviKI_1 RGCY 4 cut(s) 58, 116, 128, 137
DdeI CTNAG 3 cut(s) 188, 200, 225
FaiI YATR 6 cut(s) 35, 66, 92, 120, 141, 158
Fnu4HI GCNGC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 1 cut(s) 129
GluI GCNGC 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 20, 179
HpyCH4V TGCA 4 cut(s) 4, 61, 71, 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 134
HpyF3I CTNAG 3 cut(s) 188, 200, 225
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 4 cut(s) 5, 98, 152, 192
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 2 cut(s) 23, 36
MwoI GCNNNNNNNGC 2 cut(s) 101, 134
NspV TTCGAA 1 cut(s) 49
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 60
SatI GCNGC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 178
SetI ASST 2 cut(s) 130, 139
SfuI TTCGAA 1 cut(s) 49
SgeI CNNG 7 cut(s) 17, 32, 97, 108, 141, 179, 191
Sse9I AATT 2 cut(s) 23, 36
SspMI CTAG 1 cut(s) 129
TaqI TCGA 1 cut(s) 49
TasI AATT 2 cut(s) 23, 36
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 2 cut(s) 117, 178
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 2 cut(s) 117, 178
XapI RAATTY 1 cut(s) 23
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.