Rmu_sc0004666.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004666.1
OG0000519
Physical Location & Seq
Reverse (-)
3514 .. 4029
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004666.1_g000002.1.cds

Sequence Viewer

Length: 429 bp
atggtgtggaagcctgcggcaaatggcaagtggaaattgaacgttgatggcagctatttgcccaactgtgtcaaaggtggtgtgggtggcattctccgtgataacacagggaatttcaaagctggttttgttataccagtactaaacatggcttccccgaagcaggctacctgggatattgctaatccgaatcatgaagctattgctaatggggctcttatcgacgacatcaaggttgctgtggatgctttacataatgtctctattagttatgggtcgaggactagcaatacagtggcccatcgattggctggaatcgcgtatgaagccaacacgagtatggtctggtttgaccaagtcccagaatgtattcttgatgtattaagctatgatgtaaatgtaatcaaccccactttgggtactgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

142

Amino Acids

15.17

Weight (kDa)

5.81

Isoelectric Point (pI)

15.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 307
AccII CGCG 1 cut(s) 320
AciI CCGC 1 cut(s) 17
AclI AACGTT 1 cut(s) 42
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 2 cut(s) 141, 421
AfiI CCNNNNNNNGG 4 cut(s) 163, 307, 415, 416
AgsI TTSAA 2 cut(s) 40, 118
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 4 cut(s) 54, 122, 200, 387
AluI AGCT 4 cut(s) 54, 122, 200, 387
Alw26I GTCTC 1 cut(s) 265
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 217
BauI CACGAG 1 cut(s) 334
BbvI GCAGC 1 cut(s) 63
BccI CCATC 2 cut(s) 41, 309
BciT130I CCWGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 1 cut(s) 285
BisI GCNGC 2 cut(s) 18, 52
BlsI GCNGC 2 cut(s) 19, 53
BmcAI AGTACT 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 235
Bsa29I ATCGAT 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 307, 415, 416
Bse1I ACTGG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 4 cut(s) 163, 307, 415, 416
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 320
BshFI GGCC 1 cut(s) 299
BshVI ATCGAT 1 cut(s) 304
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 4 cut(s) 163, 307, 415, 416
BsmAI GTCTC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 344
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 217
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 299
BspDI ATCGAT 1 cut(s) 304
BspFNI CGCG 1 cut(s) 320
BspHI TCATGA 1 cut(s) 193
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 171
BssSI CACGAG 1 cut(s) 334
Bst2BI CACGAG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 68, 295
BstC8I GCNNGC 2 cut(s) 15, 165
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 320
BstMAI GTCTC 1 cut(s) 265
BstMWI GCNNNNNNNGC 4 cut(s) 212, 245, 317, 326
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 304
BsuRI GGCC 1 cut(s) 299
BsuTUI ATCGAT 1 cut(s) 304
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 2 cut(s) 15, 165
CciI TCATGA 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 298
ClaI ATCGAT 1 cut(s) 304
Csp6I GTAC 2 cut(s) 140, 420
CviAII CATG 2 cut(s) 148, 194
CviQI GTAC 2 cut(s) 140, 420
Eco24I GRGCYC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 2 cut(s) 151, 197
FaiI YATR 8 cut(s) 134, 149, 195, 255, 273, 324, 341, 390
FaqI GGGAC 1 cut(s) 344
FatI CATG 2 cut(s) 147, 193
Fnu4HI GCNGC 2 cut(s) 18, 52
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 18, 52
FspBI CTAG 1 cut(s) 285
GluI GCNGC 2 cut(s) 18, 52
HaeIII GGCC 1 cut(s) 299
Hin1II CATG 2 cut(s) 151, 197
HinfI GANTC 2 cut(s) 190, 315
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 194, 374
Hpy99I CGWCG 1 cut(s) 227
HpyCH4III ACNGT 2 cut(s) 68, 295
HpyCH4IV ACGT 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 245, 317, 326
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 2 cut(s) 151, 197
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 235
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 2 cut(s) 35, 112
MnlI CCTC 1 cut(s) 273
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 2 cut(s) 383, 427
MslI CAYNNNNRTG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 90
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 4 cut(s) 212, 245, 317, 326
NlaIII CATG 2 cut(s) 151, 197
PagI TCATGA 1 cut(s) 193
PctI GAATGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 2 cut(s) 190, 315
PflFI GACNNNGTC 1 cut(s) 356
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 2 cut(s) 19, 53
Psp1406I AACGTT 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspPI GGNCC 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 2 cut(s) 141, 421
RsaNI GTAC 2 cut(s) 140, 420
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 383, 427
SatI GCNGC 2 cut(s) 18, 52
Sau96I GGNCC 1 cut(s) 298
ScaI AGTACT 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 217
SetI ASST 8 cut(s) 45, 56, 79, 124, 173, 202, 237, 389
SfaNI GCATC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 338
Sse9I AATT 2 cut(s) 35, 112
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 2 cut(s) 68, 295
TaiI ACGT 1 cut(s) 45
TaqI TCGA 3 cut(s) 222, 278, 304
TasI AATT 2 cut(s) 35, 112
TatI WGTACW 1 cut(s) 139
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 2 cut(s) 190, 315
Tru1I TTAA 2 cut(s) 383, 427
Tru9I TTAA 2 cut(s) 383, 427
TscAI CASTG 1 cut(s) 300
TseI GCWGC 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 210, 339
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 300
Tth111I GACNNNGTC 1 cut(s) 356
Van91I CCANNNNNTGG 1 cut(s) 307
XapI RAATTY 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 2 cut(s) 308, 337
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.