RLG00000035981

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000519
Physical Location & Seq
Reverse (-)
74477316 .. 74478482
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035981

Sequence Viewer

Length: 444 bp
ATGTCCAGGTATGACATGCTAGAGCATGCTGGAATCTTGGATGATATCAAAATGGCTTTACGAGCCAAACCGGAAGTTCAGATTAGCTTTGCCCCTCGAACTTGCAACATGGTGGCTCAGCGTCTAGCCAGTTTAGCATTTGAAGATAATTATAGCTCAATCTGGAATGATACTCCACCAAATTGTATAATTGATAGTGGAGGTGGGGACCACACCCTGGTTTTACCTCACTGCCAGGACTCTCATTGGCCAATCTCCTATATAATTGCAAAACTGGCCAATGACCTGGATCCACGTAAGGAAGTGTCACAGATCATGGACCCGGGGGCGTACTTGATGTGTCGCAGCGGATCGCAGCCAACGTCTCGCCAACCACCGCCCCCGCTCAGCTCACTTATTATTCGTTTCTTTGCCTTCCAGATGTTGGCTAGTGGAATTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

148

Amino Acids

16.36

Weight (kDa)

5.48

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 217, 424
AccBSI CCGCTC 1 cut(s) 385
AciI CCGC 3 cut(s) 348, 377, 383
AclWI GGATC 3 cut(s) 284, 297, 358
AcoI YGGCCR 2 cut(s) 248, 276
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 2 cut(s) 217, 424
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 4 cut(s) 5, 216, 234, 285
AluBI AGCT 3 cut(s) 87, 156, 390
AluI AGCT 3 cut(s) 87, 156, 390
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 3 cut(s) 284, 297, 358
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 2 cut(s) 248, 276
ApeKI GCWGC 2 cut(s) 345, 355
AspS9I GGNCC 2 cut(s) 208, 319
AsuC2I CCSGG 2 cut(s) 323, 324
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 2 cut(s) 208, 319
BalI TGGCCA 2 cut(s) 250, 278
BamHI GGATCC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 357, 367
BciT130I CCWGG 4 cut(s) 7, 218, 236, 287
BcnI CCSGG 2 cut(s) 323, 324
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 3 cut(s) 20, 125, 429
BisI GCNGC 2 cut(s) 346, 356
BlpI GCTNAGC 2 cut(s) 117, 386
BlsI GCNGC 2 cut(s) 347, 357
Bme1390I CCNGG 6 cut(s) 7, 218, 236, 287, 323, 324
Bme18I GGWCC 2 cut(s) 208, 319
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 208, 319
BmiI GGNNCC 3 cut(s) 209, 291, 321
BmrFI CCNGG 6 cut(s) 7, 218, 236, 287, 323, 324
Bpu1102I GCTNAGC 2 cut(s) 117, 386
BpuMI CCSGG 2 cut(s) 323, 324
BsaAI YACGTR 1 cut(s) 296
BsaJI CCNNGG 3 cut(s) 216, 322, 323
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 424
Bse1I ACTGG 2 cut(s) 129, 279
BseBI CCWGG 4 cut(s) 7, 218, 236, 287
BseDI CCNNGG 3 cut(s) 216, 322, 323
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 217, 424
BseMII CTCAG 2 cut(s) 131, 400
BseNI ACTGG 2 cut(s) 129, 279
BseXI GCAGC 2 cut(s) 357, 367
BshFI GGCC 2 cut(s) 250, 278
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 71, 323
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 217, 424
BsmAI GTCTC 1 cut(s) 369
BsmBI CGTCTC 1 cut(s) 369
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 2 cut(s) 250, 278
BsoBI CYCGRG 1 cut(s) 322
Bsp143I GATC 3 cut(s) 289, 312, 350
Bsp1720I GCTNAGC 2 cut(s) 117, 386
BspACI CCGC 3 cut(s) 348, 377, 383
BspANI GGCC 2 cut(s) 250, 278
BspCNI CTCAG 2 cut(s) 130, 399
BspLI GGNNCC 3 cut(s) 209, 291, 321
BspPI GGATC 3 cut(s) 284, 297, 358
BsrBI CCGCTC 1 cut(s) 385
BsrI ACTGG 2 cut(s) 129, 279
BssECI CCNNGG 3 cut(s) 216, 322, 323
BssMI GATC 3 cut(s) 289, 312, 350
Bst2UI CCWGG 4 cut(s) 7, 218, 236, 287
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 117, 386
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 3 cut(s) 292, 315, 353
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 3 cut(s) 289, 312, 350
BstMWI GCNNNNNNNGC 3 cut(s) 62, 134, 275
BstNI CCWGG 4 cut(s) 7, 218, 236, 287
BstNSI RCATGY 2 cut(s) 19, 29
BstSCI CCNGG 6 cut(s) 5, 216, 234, 285, 321, 322
BstV1I GCAGC 2 cut(s) 357, 367
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 2 cut(s) 250, 278
BtsCI GGATG 1 cut(s) 46
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 208, 319
Cfr9I CCCGGG 1 cut(s) 322
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 331
CviAII CATG 4 cut(s) 16, 26, 109, 316
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 2 cut(s) 117, 386
DpnI GATC 3 cut(s) 291, 314, 352
DpnII GATC 3 cut(s) 289, 312, 350
EaeI YGGCCR 2 cut(s) 248, 276
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 208, 319
Eco88I CYCGRG 1 cut(s) 322
EcoRII CCWGG 4 cut(s) 5, 216, 234, 285
EcoRV GATATC 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 369
FaeI CATG 4 cut(s) 19, 29, 112, 319
FaiI YATR 9 cut(s) 12, 17, 27, 110, 153, 188, 261, 263, 317
FaqI GGGAC 1 cut(s) 221
FatI CATG 4 cut(s) 15, 25, 108, 315
FauI CCCGC 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 346, 356
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 2 cut(s) 346, 356
FspBI CTAG 3 cut(s) 20, 125, 429
GluI GCNGC 2 cut(s) 346, 356
HaeIII GGCC 2 cut(s) 250, 278
HapII CCGG 2 cut(s) 71, 323
HgaI GACGC 1 cut(s) 110
Hin1II CATG 4 cut(s) 19, 29, 112, 319
HinfI GANTC 2 cut(s) 33, 239
HpaII CCGG 2 cut(s) 71, 323
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 2 cut(s) 163, 418
HpyAV CCTTC 1 cut(s) 424
HpyCH4IV ACGT 2 cut(s) 295, 362
HpyCH4V TGCA 2 cut(s) 105, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 134, 275
HpyF3I CTNAG 2 cut(s) 117, 386
HpySE526I ACGT 2 cut(s) 295, 362
Hsp92II CATG 4 cut(s) 19, 29, 112, 319
Kzo9I GATC 3 cut(s) 289, 312, 350
Lsp1109I GCAGC 2 cut(s) 357, 367
MaeI CTAG 3 cut(s) 20, 125, 429
MaeII ACGT 2 cut(s) 295, 362
MaeIII GTNAC 1 cut(s) 306
MalI GATC 3 cut(s) 291, 314, 352
MbiI CCGCTC 1 cut(s) 385
MboI GATC 3 cut(s) 289, 312, 350
MboII GAAGA 1 cut(s) 155
MflI RGATCY 1 cut(s) 289
MlsI TGGCCA 2 cut(s) 250, 278
MluCI AATT 5 cut(s) 148, 181, 189, 264, 435
MluNI TGGCCA 2 cut(s) 250, 278
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 3 cut(s) 105, 194, 237
Mox20I TGGCCA 2 cut(s) 250, 278
MscI TGGCCA 2 cut(s) 250, 278
Msp20I TGGCCA 2 cut(s) 250, 278
MspA1I CMGCKG 1 cut(s) 348
MspI CCGG 2 cut(s) 71, 323
MspR9I CCNGG 6 cut(s) 7, 218, 236, 287, 323, 324
MvaI CCWGG 4 cut(s) 7, 218, 236, 287
MwoI GCNNNNNNNGC 3 cut(s) 62, 134, 275
NciI CCSGG 2 cut(s) 323, 324
NdeII GATC 3 cut(s) 289, 312, 350
NlaIII CATG 4 cut(s) 19, 29, 112, 319
NlaIV GGNNCC 3 cut(s) 209, 291, 321
NmuCI GTSAC 1 cut(s) 306
NspI RCATGY 2 cut(s) 19, 29
PaeI GCATGC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PfeI GAWTC 1 cut(s) 33
PflMI CCANNNNNTGG 2 cut(s) 217, 424
PkrI GCNGC 2 cut(s) 347, 357
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 296
Psp6I CCWGG 4 cut(s) 5, 216, 234, 285
PspGI CCWGG 4 cut(s) 5, 216, 234, 285
PspN4I GGNNCC 3 cut(s) 209, 291, 321
PspPI GGNCC 2 cut(s) 208, 319
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SatI GCNGC 2 cut(s) 346, 356
Sau3AI GATC 3 cut(s) 289, 312, 350
Sau96I GGNCC 2 cut(s) 208, 319
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 6 cut(s) 7, 218, 236, 287, 323, 324
SetI ASST 9 cut(s) 11, 89, 158, 205, 229, 288, 298, 365, 392
SinI GGWCC 2 cut(s) 208, 319
SmaI CCCGGG 1 cut(s) 324
SphI GCATGC 1 cut(s) 29
Sse9I AATT 5 cut(s) 148, 181, 189, 264, 435
SsiI CCGC 3 cut(s) 348, 377, 383
SspMI CTAG 3 cut(s) 20, 125, 429
StyD4I CCNGG 6 cut(s) 5, 216, 234, 285, 321, 322
TaiI ACGT 2 cut(s) 298, 365
TaqI TCGA 1 cut(s) 97
TasI AATT 5 cut(s) 148, 181, 189, 264, 435
TfiI GAWTC 1 cut(s) 33
TscAI CASTG 1 cut(s) 236
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 2 cut(s) 345, 355
Tsp45I GTSAC 1 cut(s) 306
TspMI CCCGGG 1 cut(s) 322
TspRI CASTG 1 cut(s) 236
Van91I CCANNNNNTGG 2 cut(s) 217, 424
VpaK11BI GGWCC 2 cut(s) 208, 319
XceI RCATGY 2 cut(s) 19, 29
XmaI CCCGGG 1 cut(s) 322
XspI CTAG 3 cut(s) 20, 125, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.