RchiOBHm_Chr6g0281891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000519
Physical Location & Seq
Reverse (-)
45241165 .. 45244016
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25285

Sequence Viewer

Length: 174 bp
ATGCCTAGCCGGAAATGCAACTTCCGACCACTTTCTCCCCTCAGCGCCATCACAAATCGATTCGGAACAAGCCACTCACTCAAAATCCCGAAGCTTTTGCACCGTCTGACGCTGGAAGACCACCTAACACGCCTCACGTCTGATCCCCCGCCACTGCCTGTCTCCAATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.4

Weight (kDa)

10.89

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 149
AclWI GGATC 1 cut(s) 137
AjiI CACGTC 1 cut(s) 138
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 1 cut(s) 137
AspLEI GCGC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 48
BmgBI CACGTC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 41
Bsa29I ATCGAT 1 cut(s) 58
BseCI ATCGAT 1 cut(s) 58
BseMII CTCAG 1 cut(s) 55
BshVI ATCGAT 1 cut(s) 58
BsiSI CCGG 1 cut(s) 10
BsmAI GTCTC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 54
BspDI ATCGAT 1 cut(s) 58
BspPI GGATC 1 cut(s) 137
BssMI GATC 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 58
BsuTUI ATCGAT 1 cut(s) 58
BtrI CACGTC 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 152
CfoI GCGC 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 58
CseI GACGC 1 cut(s) 118
CviJI RGCY 3 cut(s) 9, 72, 94
CviKI_1 RGCY 3 cut(s) 9, 72, 94
DdeI CTNAG 1 cut(s) 41
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
FauI CCCGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 48
HapII CCGG 1 cut(s) 10
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 47
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 60
HpaII CCGG 1 cut(s) 10
Hpy188I TCNGA 4 cut(s) 26, 65, 108, 142
Hpy188III TCNNGA 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 18, 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 137
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 2 cut(s) 23, 98
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 137
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 2 cut(s) 50, 143
MspI CCGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 142
SetI ASST 3 cut(s) 96, 126, 140
SgeI CNNG 9 cut(s) 18, 22, 81, 100, 125, 141, 148, 160, 170
SsiI CCGC 1 cut(s) 149
SspMI CTAG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 58
TfiI GAWTC 1 cut(s) 60
TscAI CASTG 1 cut(s) 159
TspRI CASTG 1 cut(s) 159
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.