Rroxscaffold_1G00056090

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000519
Physical Location & Seq
Reverse (-)
77849963 .. 77851157
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056090.1

Sequence Viewer

Length: 327 bp
ATGGCAACTTTTGTCAGCACGGAGCAATATACGGGCTCTGCAAAGCAAGCAGAACTGCTAGCTATCAAACGAGGTGTGGACTTGGTTAAGGAGTTAGAGCTACAACATGTCACCATTAAGAGTGACTGCCTTGATGCAGTGCAGCTAATCCTTAACAAAGACGATGACTTGGATGAACTAGGAGCTCTAGTTGATGACATTTTGGTGACTATGGGGAGTTTGCGGGAAGTATGTATACAACATGCTTTGAGAACTAGAAACAAAGTTGCCCATAGGCTTGCTGCTTTCGCCTTTGAGTCTGATAATTTTAATGAGGTTTGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

108

Amino Acids

12.11

Weight (kDa)

4.91

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 9 - 97 7.8e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AciI CCGC 1 cut(s) 223
AflIII ACRYGT 1 cut(s) 106
AluBI AGCT 4 cut(s) 62, 100, 145, 185
AluI AGCT 4 cut(s) 62, 100, 145, 185
Alw21I GWGCWC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 142, 281
AsuHPI GGTGA 2 cut(s) 103, 217
AsuNHI GCTAGC 1 cut(s) 58
BanII GRGCYC 2 cut(s) 38, 187
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 154, 268
BfaI CTAG 4 cut(s) 59, 179, 188, 255
BisI GCNGC 2 cut(s) 143, 282
BlsI GCNGC 2 cut(s) 144, 283
BmsI GCATC 1 cut(s) 124
BmtI GCTAGC 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
BseGI GGATG 1 cut(s) 178
BseXI GCAGC 2 cut(s) 154, 268
BsgI GTGCAG 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 38, 187
BspACI CCGC 1 cut(s) 223
BspOI GCTAGC 1 cut(s) 62
BssNAI GTATAC 1 cut(s) 236
Bst1107I GTATAC 1 cut(s) 236
BstC8I GCNNGC 3 cut(s) 48, 60, 279
BstF5I GGATG 1 cut(s) 178
BstMWI GCNNNNNNNGC 2 cut(s) 47, 287
BstNSI RCATGY 2 cut(s) 110, 245
BstV1I GCAGC 2 cut(s) 154, 268
BstZ17I GTATAC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 3 cut(s) 48, 60, 279
CviAII CATG 2 cut(s) 107, 242
CviJI RGCY 6 cut(s) 36, 62, 100, 145, 185, 277
CviKI_1 RGCY 6 cut(s) 36, 62, 100, 145, 185, 277
Ecl136II GAGCTC 1 cut(s) 185
Eco24I GRGCYC 2 cut(s) 38, 187
Eco53kI GAGCTC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 185
EcoT38I GRGCYC 2 cut(s) 38, 187
FaeI CATG 2 cut(s) 110, 245
FaiI YATR 7 cut(s) 30, 108, 212, 232, 236, 243, 273
FatI CATG 2 cut(s) 106, 241
FauI CCCGC 1 cut(s) 216
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 143, 282
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 2 cut(s) 38, 187
Fsp4HI GCNGC 2 cut(s) 143, 282
FspBI CTAG 4 cut(s) 59, 179, 188, 255
GluI GCNGC 2 cut(s) 143, 282
Hin1II CATG 2 cut(s) 110, 245
HinfI GANTC 1 cut(s) 296
HphI GGTGA 2 cut(s) 103, 217
Hpy166II GTNNAC 2 cut(s) 79, 236
Hpy188I TCNGA 1 cut(s) 301
Hpy8I GTNNAC 2 cut(s) 79, 236
HpyCH4V TGCA 3 cut(s) 41, 137, 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 287
Hsp92II CATG 2 cut(s) 110, 245
LmnI GCTCC 2 cut(s) 22, 182
Lsp1109I GCAGC 2 cut(s) 154, 268
LweI GCATC 1 cut(s) 124
MaeI CTAG 4 cut(s) 59, 179, 188, 255
MaeIII GTNAC 3 cut(s) 109, 122, 205
MhlI GDGCHC 2 cut(s) 38, 187
MluCI AATT 1 cut(s) 304
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 2 cut(s) 65, 307
MseI TTAA 4 cut(s) 87, 117, 153, 309
MslI CAYNNNNRTG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 47, 287
NheI GCTAGC 1 cut(s) 58
NlaIII CATG 2 cut(s) 110, 245
NmuCI GTSAC 3 cut(s) 109, 122, 205
NspI RCATGY 2 cut(s) 110, 245
PciI ACATGT 1 cut(s) 106
PkrI GCNGC 2 cut(s) 144, 283
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PscI ACATGT 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 203
SacI GAGCTC 1 cut(s) 187
SaqAI TTAA 4 cut(s) 87, 117, 153, 309
SatI GCNGC 2 cut(s) 143, 282
SchI GAGTC 1 cut(s) 305
SduI GDGCHC 2 cut(s) 38, 187
SetI ASST 6 cut(s) 64, 76, 102, 147, 187, 318
SfaNI GCATC 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 203
Sse9I AATT 1 cut(s) 304
SsiI CCGC 1 cut(s) 223
SspMI CTAG 4 cut(s) 59, 179, 188, 255
SstI GAGCTC 1 cut(s) 187
TasI AATT 1 cut(s) 304
Tru1I TTAA 4 cut(s) 87, 117, 153, 309
Tru9I TTAA 4 cut(s) 87, 117, 153, 309
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 3 cut(s) 109, 122, 205
TseI GCWGC 2 cut(s) 142, 281
Tsp45I GTSAC 3 cut(s) 109, 122, 205
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 144
XceI RCATGY 2 cut(s) 110, 245
XmiI GTMKAC 1 cut(s) 235
XspI CTAG 4 cut(s) 59, 179, 188, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.