pycom11g18020

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000519
Physical Location & Seq
Forward (+)
20269930 .. 20270279
350 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g18020.1

Sequence Viewer

Length: 300 bp
ATGGATGGTTCAAGTGGAGTTATCAAGGGGAGTAATGGTGGTTTCAGGGCAGCGGGAGTGTGGCGTTTTCAGGGGTTATCATCGGTTAATCAAGTCAAGCTGCTTGTTCTTCGTGCGGGGTTGCAGCTGGCGAGGTCTCTTCGCTGTGCCCAAGTGGTGGTCGAAACTGACTCCTTAGAGGCAGTGGCGGTTTGCAATGAAAGGAACATGGACCTGTCAAATCTTGGTTTTATTGCTAATGATATACAGGTGTTGATGGCTGACTTTGGTGGGTGTACCATTTCATACATCCCACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

100

Amino Acids

10.55

Weight (kDa)

7.72

Isoelectric Point (pI)

25.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 4 - 99 1.6e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 157
AciI CCGC 3 cut(s) 53, 116, 188
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 1 cut(s) 12
AluBI AGCT 2 cut(s) 100, 127
AluI AGCT 2 cut(s) 100, 127
Alw26I GTCTC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 50, 100, 124
AspS9I GGNCC 1 cut(s) 211
AvaII GGWCC 1 cut(s) 211
BaeGI GKGCMC 1 cut(s) 151
BbvI GCAGC 3 cut(s) 62, 87, 136
BccI CCATC 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 141
BisI GCNGC 3 cut(s) 51, 101, 125
BlsI GCNGC 3 cut(s) 52, 102, 126
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BsaI GGTCTC 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 202
BseGI GGATG 2 cut(s) 10, 288
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 3 cut(s) 62, 87, 136
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 151
BspACI CCGC 3 cut(s) 53, 116, 188
BspTNI GGTCTC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 175
BstF5I GGATG 2 cut(s) 10, 288
BstMAI GTCTC 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 3 cut(s) 62, 87, 136
BtsCI GGATG 2 cut(s) 10, 288
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 208
CviJI RGCY 3 cut(s) 100, 127, 260
CviKI_1 RGCY 3 cut(s) 100, 127, 260
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 211
FaeI CATG 1 cut(s) 211
FaiI YATR 3 cut(s) 209, 245, 286
FatI CATG 1 cut(s) 207
FauI CCCGC 2 cut(s) 46, 109
Fnu4HI GCNGC 3 cut(s) 51, 101, 125
FokI GGATG 2 cut(s) 17, 275
Fsp4HI GCNGC 3 cut(s) 51, 101, 125
GluI GCNGC 3 cut(s) 51, 101, 125
Hin1II CATG 1 cut(s) 211
HinfI GANTC 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 276
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 2 cut(s) 124, 195
HpyF3I CTNAG 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 1 cut(s) 211
LpnPI CCDG 5 cut(s) 31, 56, 113, 227, 233
Lsp1109I GCAGC 3 cut(s) 62, 87, 136
MaeII ACGT 1 cut(s) 295
MboII GAAGA 2 cut(s) 101, 131
MhlI GDGCHC 1 cut(s) 151
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 2 cut(s) 126, 172
MseI TTAA 1 cut(s) 87
MspA1I CMGCKG 2 cut(s) 53, 127
NlaIII CATG 1 cut(s) 211
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 3 cut(s) 52, 102, 126
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 3 cut(s) 51, 101, 125
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 1 cut(s) 164
SduI GDGCHC 1 cut(s) 151
SetI ASST 6 cut(s) 102, 129, 137, 216, 252, 298
SinI GGWCC 1 cut(s) 211
SsiI CCGC 3 cut(s) 53, 116, 188
TaiI ACGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 162
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 189
TseI GCWGC 3 cut(s) 50, 100, 124
TspDTI ATGAA 2 cut(s) 213, 273
TspRI CASTG 1 cut(s) 189
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.