Rmu_sc0007767.1_g000020

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007767.1
OG0000519
Physical Location & Seq
Reverse (-)
87875 .. 88303
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007767.1_g000020.1.cds

Sequence Viewer

Length: 351 bp
atgcatggtggaatcgagggaatactgacagatgatacaggaaactttcaagctgcttttgcagtccctgtatacagcgctgtcattgagacagactgcttggaagctattcaagatattgctgaaacacactttactcatgtagctaccgaaggccttcttaacaatatcagaggtgagctactttccaggccaaacatcatattgcagcatgctcctcggagttgtaacagagtagcacattgcttagctaattatgcctatgaggccagagctagctccatttggcttaatcatcctcctgcccttattatggacctgatcaagtttgattgtaaccatatgggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

116

Amino Acids

12.76

Weight (kDa)

5.29

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 72
AfeI AGCGCT 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 2 cut(s) 50, 113
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 7 cut(s) 53, 107, 146, 181, 251, 275, 279
AluI AGCT 7 cut(s) 53, 107, 146, 181, 251, 275, 279
Alw26I GTCTC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 68
Aor51HI AGCGCT 1 cut(s) 79
AoxI GGCC 3 cut(s) 154, 191, 267
ApeKI GCWGC 2 cut(s) 53, 208
Asp700I GAANNNNTTC 2 cut(s) 108, 156
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 188
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 40, 220
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 190
BclI TGATCA 1 cut(s) 321
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 81
BglI GCCNNNNNGGC 1 cut(s) 266
BisI GCNGC 2 cut(s) 54, 209
BlpI GCTNAGC 1 cut(s) 247
BlsI GCNGC 2 cut(s) 55, 210
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 190
BmtI GCTAGC 1 cut(s) 279
Bpu1102I GCTNAGC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 40, 220
BshFI GGCC 3 cut(s) 156, 193, 269
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 3 cut(s) 156, 193, 269
Bsp143I GATC 1 cut(s) 321
Bsp1720I GCTNAGC 1 cut(s) 247
BspANI GGCC 3 cut(s) 156, 193, 269
BspOI GCTAGC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 1 cut(s) 321
BssNAI GTATAC 1 cut(s) 73
Bst1107I GTATAC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 190
BstC8I GCNNGC 2 cut(s) 213, 277
BstDEI CTNAG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 321
BstMWI GCNNNNNNNGC 3 cut(s) 59, 257, 266
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 40, 220
BstZ17I GTATAC 1 cut(s) 73
BsuRI GGCC 3 cut(s) 156, 193, 269
BtsCI GGATG 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 213, 277
CaiI CAGNNNCTG 1 cut(s) 68
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 316
CviAII CATG 3 cut(s) 5, 140, 212
DdeI CTNAG 1 cut(s) 247
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
Eco147I AGGCCT 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 316
Eco47III AGCGCT 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 143, 215
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FaqI GGGAC 1 cut(s) 50
FatI CATG 3 cut(s) 4, 139, 211
FauNDI CATATG 1 cut(s) 342
FbaI TGATCA 1 cut(s) 321
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 54, 209
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 2 cut(s) 54, 209
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 54, 209
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 3 cut(s) 156, 193, 269
HhaI GCGC 1 cut(s) 80
Hin1II CATG 3 cut(s) 8, 143, 215
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 1 cut(s) 12
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 173, 222
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 146, 167
HpyCH4V TGCA 3 cut(s) 4, 62, 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 257, 266
HpyF3I CTNAG 1 cut(s) 247
Hsp92II CATG 3 cut(s) 8, 143, 215
HspAI GCGC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 220, 284
LpnPI CCDG 7 cut(s) 24, 81, 175, 202, 283, 315, 332
Lsp1109I GCAGC 2 cut(s) 40, 220
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 227, 335
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MluCI AATT 1 cut(s) 253
MnlI CCTC 5 cut(s) 10, 167, 228, 259, 309
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 108, 156
MseI TTAA 2 cut(s) 162, 291
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 3 cut(s) 59, 257, 266
NdeI CATATG 1 cut(s) 342
NdeII GATC 1 cut(s) 321
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 3 cut(s) 8, 143, 215
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 215
PaeI GCATGC 1 cut(s) 215
PceI AGGCCT 1 cut(s) 156
PdmI GAANNNNTTC 2 cut(s) 108, 156
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 2 cut(s) 55, 210
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspPI GGNCC 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 68
SaqAI TTAA 2 cut(s) 162, 291
SatI GCNGC 2 cut(s) 54, 209
Sau3AI GATC 1 cut(s) 321
Sau96I GGNCC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 190
SetI ASST 9 cut(s) 55, 109, 148, 178, 183, 253, 277, 281, 321
SinI GGWCC 1 cut(s) 316
SphI GCATGC 1 cut(s) 215
Sse9I AATT 1 cut(s) 253
SseBI AGGCCT 1 cut(s) 156
SspMI CTAG 1 cut(s) 276
StuI AGGCCT 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 188
TaqI TCGA 1 cut(s) 15
TasI AATT 1 cut(s) 253
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 162, 291
Tru9I TTAA 2 cut(s) 162, 291
TseI GCWGC 2 cut(s) 53, 208
VpaK11BI GGWCC 1 cut(s) 316
XceI RCATGY 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 72
XmnI GAANNNNTTC 2 cut(s) 108, 156
XspI CTAG 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.