FvH4_4g13701

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000519
Physical Location & Seq
Reverse (-)
17237790 .. 17238104
315 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13701.t1

Sequence Viewer

Length: 315 bp
ATGGCCATTAGAGCAGGTCTAGACCTACTGCACTCTATGCAGACAAGAGATGTTACAATTCAAAGTGACTGTCTTGAAGCCATAGCTGAAATTAAAGCTCCAGATCATGAGCTTTTGGCGAATGGAGGCATTATAGATGATGTAAAACATCTCTGTAATAGCATAGTGAATGTTTCTCTTGTGCATACGCCAAGAACTTGTAATGGCATAGCACATAGACTTGCTGCTATAGGTTTTGATGACAACTTAGCAGCTATTTGGGTGGACAATCCACCAGAATGTATGCTCGACCTTCTCCAGATTGAAGGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

105

Amino Acids

11.27

Weight (kDa)

4.62

Isoelectric Point (pI)

27.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 76 5.4e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 3 cut(s) 62, 77, 305
AluBI AGCT 4 cut(s) 86, 98, 112, 254
AluI AGCT 4 cut(s) 86, 98, 112, 254
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 224, 251
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 211, 263
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 5
BisI GCNGC 2 cut(s) 225, 252
BlsI GCNGC 2 cut(s) 226, 253
BpmI CTGGAG 2 cut(s) 84, 281
BseXI GCAGC 2 cut(s) 211, 263
BsgI GTGCAG 1 cut(s) 14
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 103
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 5
BssMI GATC 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 247
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 11, 37
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 211, 263
BsuRI GGCC 1 cut(s) 5
BveI ACCTGC 1 cut(s) 5
CciI TCATGA 1 cut(s) 106
CviAII CATG 1 cut(s) 107
CviJI RGCY 6 cut(s) 5, 80, 86, 98, 112, 254
CviKI_1 RGCY 6 cut(s) 5, 80, 86, 98, 112, 254
DdeI CTNAG 1 cut(s) 247
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 3
FaeI CATG 1 cut(s) 110
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 225, 252
Fsp4HI GCNGC 2 cut(s) 225, 252
FspBI CTAG 1 cut(s) 20
GluI GCNGC 2 cut(s) 225, 252
GsuI CTGGAG 2 cut(s) 84, 281
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 265
Hpy188III TCNNGA 5 cut(s) 20, 74, 101, 107, 298
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 299, 302
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 31, 40, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 37
HpyF3I CTNAG 1 cut(s) 247
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 3 cut(s) 114, 288, 311
Lsp1109I GCAGC 2 cut(s) 211, 263
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 52, 65
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 57, 90
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 119
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 11, 37
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 65
PagI TCATGA 1 cut(s) 106
PkrI GCNGC 2 cut(s) 226, 253
RseI CAYNNNNRTG 1 cut(s) 277
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 2 cut(s) 225, 252
Sau3AI GATC 1 cut(s) 103
SetI ASST 8 cut(s) 19, 27, 88, 100, 114, 235, 256, 294
SfcI CTRYAG 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 277
Sse9I AATT 2 cut(s) 57, 90
SspMI CTAG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 288
TasI AATT 2 cut(s) 57, 90
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 224, 251
Tsp45I GTSAC 1 cut(s) 65
XbaI TCTAGA 1 cut(s) 19
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.