Rh6BG073000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000519
Physical Location & Seq
Reverse (-)
11024249 .. 11024599
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG073000.1

Sequence Viewer

Length: 351 bp
ATGCCTAACCGAAAACGCAACTTCCGACCACTCTCTCCCCTCACCTCCATCACAAATCGATTCGGAACAAGCCATTCACTCAAAACCCCGAAGCATTGCACCACCGTCCTCCTTCACATGCAACACCCCCAGACTGCGCGCTACTGTACCTCAAGCCTTGCTGATTTCCGGCCATCGTTTCAACTCCCAGCAGCCACCGACGAGCTCGGGGTAAGCTGTTTATCATCAGCCCAAGGCCTCGTCGCTAACCCGAAGCTGGAGAACGTCGCGTGTGCATTCGCCGGCGATCTGGGCTTCTGCAAAGCCAGGGATACCACCGCCGGCCATGATCGAACGAAGCCATCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.6

Weight (kDa)

9.6

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 139, 269
AciI CCGC 1 cut(s) 318
AcoI YGGCCR 2 cut(s) 170, 322
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 3 cut(s) 205, 216, 256
AluI AGCT 3 cut(s) 205, 216, 256
Alw21I GWGCWC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 3 cut(s) 170, 235, 322
ApeKI GCWGC 1 cut(s) 191
AspLEI GCGC 2 cut(s) 139, 141
AsuHPI GGTGA 2 cut(s) 34, 336
AvaI CYCGRG 1 cut(s) 206
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 203
BccI CCATC 3 cut(s) 56, 181, 349
BciT130I CCWGG 1 cut(s) 307
BciVI GTATCC 1 cut(s) 304
BfuI GTATCC 1 cut(s) 304
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 136
Bsa29I ATCGAT 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 232, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse118I RCCGGY 2 cut(s) 281, 320
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 307
BseCI ATCGAT 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 232, 306
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 94
BsePI GCGCGC 1 cut(s) 137
BseXI GCAGC 1 cut(s) 203
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 2 cut(s) 139, 269
BshFI GGCC 3 cut(s) 172, 237, 324
BshVI ATCGAT 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 3 cut(s) 169, 282, 321
BslI CCNNNNNNNGG 1 cut(s) 256
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 3 cut(s) 172, 237, 324
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 286, 328
BspACI CCGC 1 cut(s) 318
BspANI GGCC 3 cut(s) 172, 237, 324
BspDI ATCGAT 1 cut(s) 58
BspFNI CGCG 2 cut(s) 139, 269
BsrDI GCAATG 1 cut(s) 94
BsrFI RCCGGY 2 cut(s) 281, 320
BssAI RCCGGY 2 cut(s) 281, 320
BssECI CCNNGG 2 cut(s) 232, 306
BssHII GCGCGC 1 cut(s) 137
BssMI GATC 2 cut(s) 286, 328
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 106, 146
BstC8I GCNNGC 3 cut(s) 139, 283, 322
BstFNI CGCG 2 cut(s) 139, 269
BstHHI GCGC 2 cut(s) 139, 141
BstKTI GATC 2 cut(s) 289, 331
BstMBI GATC 2 cut(s) 286, 328
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 305
BstUI CGCG 2 cut(s) 139, 269
BstV1I GCAGC 1 cut(s) 203
Bsu15I ATCGAT 1 cut(s) 58
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 3 cut(s) 172, 237, 324
BsuTUI ATCGAT 1 cut(s) 58
Cac8I GCNNGC 3 cut(s) 139, 283, 322
CfoI GCGC 2 cut(s) 139, 141
Cfr10I RCCGGY 2 cut(s) 281, 320
ClaI ATCGAT 1 cut(s) 58
Csp6I GTAC 1 cut(s) 147
CviAII CATG 2 cut(s) 118, 326
CviQI GTAC 1 cut(s) 147
DpnI GATC 2 cut(s) 288, 330
DpnII GATC 2 cut(s) 286, 328
EaeI YGGCCR 2 cut(s) 170, 322
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 232
Eco147I AGGCCT 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 121, 329
FaiI YATR 2 cut(s) 119, 327
FatI CATG 2 cut(s) 117, 325
Fnu4HI GCNGC 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 192
GlaI GCGC 2 cut(s) 138, 140
GluI GCNGC 1 cut(s) 192
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 278
HaeIII GGCC 3 cut(s) 172, 237, 324
HapII CCGG 3 cut(s) 169, 282, 321
HhaI GCGC 2 cut(s) 139, 141
Hin1II CATG 2 cut(s) 121, 329
Hin6I GCGC 2 cut(s) 137, 139
HinP1I GCGC 2 cut(s) 137, 139
HinfI GANTC 1 cut(s) 60
HpaII CCGG 3 cut(s) 169, 282, 321
HphI GGTGA 2 cut(s) 34, 336
Hpy188I TCNGA 2 cut(s) 26, 65
Hpy99I CGWCG 3 cut(s) 203, 245, 269
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 106, 146
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 4 cut(s) 99, 121, 275, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 121, 329
HspAI GCGC 2 cut(s) 137, 139
KroI GCCGGC 2 cut(s) 281, 320
KroNI GCCGGC 2 cut(s) 283, 322
Kzo9I GATC 2 cut(s) 286, 328
LpnPI CCDG 9 cut(s) 143, 182, 201, 242, 275, 292, 295, 319, 334
Lsp1109I GCAGC 1 cut(s) 203
MaeII ACGT 1 cut(s) 264
MalI GATC 2 cut(s) 288, 330
MboI GATC 2 cut(s) 286, 328
MhlI GDGCHC 1 cut(s) 207
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 5 cut(s) 50, 55, 119, 160, 248
MreI CGCCGGCG 1 cut(s) 281
MroNI GCCGGC 2 cut(s) 281, 320
MspI CCGG 3 cut(s) 169, 282, 321
MspR9I CCNGG 1 cut(s) 307
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 2 cut(s) 139, 269
MwoI GCNNNNNNNGC 1 cut(s) 291
NaeI GCCGGC 2 cut(s) 283, 322
NdeII GATC 2 cut(s) 286, 328
NgoMIV GCCGGC 2 cut(s) 281, 320
NlaIII CATG 2 cut(s) 121, 329
NspI RCATGY 1 cut(s) 121
PauI GCGCGC 1 cut(s) 137
PceI AGGCCT 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PctI GAATGC 1 cut(s) 275
PdiI GCCGGC 2 cut(s) 283, 322
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 305
PteI GCGCGC 1 cut(s) 137
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SacI GAGCTC 1 cut(s) 207
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 2 cut(s) 286, 328
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 207
SetI ASST 7 cut(s) 47, 152, 207, 218, 258, 267, 349
SgrAI CRCCGGYG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 1 cut(s) 318
SstI GAGCTC 1 cut(s) 207
StuI AGGCCT 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 106, 146
TaiI ACGT 1 cut(s) 267
TaqI TCGA 2 cut(s) 58, 331
TfiI GAWTC 1 cut(s) 60
TseI GCWGC 1 cut(s) 191
XceI RCATGY 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.