RLG00000011791

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000519
Physical Location & Seq
Reverse (-)
12695442 .. 12697481
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011791

Sequence Viewer

Length: 345 bp
ATGAAGGTGGAAATAGTGATAGTTAAGGGTGGTGGTCAAAGTTTGGCCGGGCAGAGACGCACAATCAGTAATGTTGTGGTGGAAACAGATTGTATGGAAGCTGTCTCGAGTATTGTCGATCAGCAATATACCCAGGTTCTTGATGAAGCCGTTCTAGATGATATTCGACAGGTCCTCCAGCAAAGAACTGATGTGGTAGTACGACACACTCCTAGAGTTTGTAATCGAGTTGCTCACTGTCTAGCAAACTCAGCCTATGCGGCGAATCATGCGTCGGTTTGGCTCACACAACCTCCAGCTTTCATTCTGGAGCTACTTACCGATGATTGTAAACATCTGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

115

Amino Acids

12.57

Weight (kDa)

5.71

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 19 - 85 5.5e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 45
AfaI GTAC 1 cut(s) 201
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 3 cut(s) 101, 299, 313
AluI AGCT 3 cut(s) 101, 299, 313
Alw26I GTCTC 2 cut(s) 49, 109
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 1 cut(s) 45
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
Asp700I GAANNNNTTC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 172
AsuC2I CCSGG 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 134
BcnI CCSGG 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 49, 109
BfaI CTAG 3 cut(s) 155, 213, 242
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 49, 134
Bme18I GGWCC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 172
BmrFI CCNGG 2 cut(s) 49, 134
BpmI CTGGAG 3 cut(s) 161, 279, 329
BpuMI CCSGG 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 4 cut(s) 159, 189, 277, 307
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 264
BshFI GGCC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 49, 109
BsmBI CGTCTC 1 cut(s) 49
BsnI GGCC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 106
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 250
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 2 cut(s) 49, 109
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 251, 260, 269
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 2 cut(s) 47, 132
BsuRI GGCC 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 172
CseI GACGC 2 cut(s) 66, 261
Csp6I GTAC 1 cut(s) 200
CviAII CATG 1 cut(s) 269
CviJI RGCY 7 cut(s) 47, 101, 149, 254, 283, 299, 313
CviKI_1 RGCY 7 cut(s) 47, 101, 149, 254, 283, 299, 313
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 250
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 1 cut(s) 272
FaiI YATR 4 cut(s) 95, 129, 258, 270
FatI CATG 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 3 cut(s) 155, 213, 242
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 3 cut(s) 161, 279, 329
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 48
HgaI GACGC 2 cut(s) 66, 261
Hin1II CATG 1 cut(s) 272
HinfI GANTC 1 cut(s) 265
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 332
Hpy188III TCNNGA 4 cut(s) 106, 140, 155, 308
Hpy8I GTNNAC 1 cut(s) 332
Hpy99I CGWCG 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 260, 269
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 1 cut(s) 272
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 8 cut(s) 61, 119, 146, 155, 191, 293, 309, 323
MaeI CTAG 3 cut(s) 155, 213, 242
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MnlI CCTC 2 cut(s) 185, 303
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 1 cut(s) 24
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 2 cut(s) 49, 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 251, 260, 269
NciI CCSGG 1 cut(s) 49
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 272
PaeR7I CTCGAG 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 1 cut(s) 262
PpuMI RGGWCCY 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspPI GGNCC 1 cut(s) 172
PspPPI RGGWCCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 2 cut(s) 49, 134
SetI ASST 7 cut(s) 9, 103, 138, 174, 295, 301, 315
Sfr274I CTCGAG 1 cut(s) 106
SinI GGWCC 1 cut(s) 172
SlaI CTCGAG 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
SsiI CCGC 1 cut(s) 260
SspMI CTAG 3 cut(s) 155, 213, 242
StyD4I CCNGG 2 cut(s) 47, 132
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 4 cut(s) 107, 117, 166, 226
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 17, 159, 292
TspRI CASTG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 172
XbaI TCTAGA 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 3 cut(s) 155, 213, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.