Rmu_sc0023292.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023292.1
OG0000519
Physical Location & Seq
Forward (+)
1122 .. 2454
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023292.1_g000001.1.cds

Sequence Viewer

Length: 468 bp
atggggagcggtgaaggggagcagcgacgatgtgagggagagagatgcttgcgtgctgatacgtctgtgatggggagcagcgacgatgcggtggtgcgggtatatgcatttacttgtgattctccgagatcagtaaatagattttgtcacaactttgtatgggaatgccaacacgacctgtacaagaattgtacctacaatgtgctattgcggagggctccaactaatgaagagtttgcagaacaagattttactcatgttgctactaaagggatcatagatgacattcgacctgagctgcaattgctgccaaacatcacattgcagcatgtacctagaatttgtaatagagtattacactgtttggctaacactgcctatgaagctagtactagctctacttggcttgaccatcctctagatttcattctggacttgattaagtttgatggtaagcatacggaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

155

Amino Acids

17.75

Weight (kDa)

5.45

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 9
AciI CCGC 4 cut(s) 9, 89, 97, 211
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 339
AfaI GTAC 4 cut(s) 182, 193, 333, 391
AluBI AGCT 3 cut(s) 298, 386, 396
AluI AGCT 3 cut(s) 298, 386, 396
AlwI GGATC 1 cut(s) 281
ApeKI GCWGC 5 cut(s) 22, 78, 298, 307, 325
ApoI RAATTY 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 23
BaeI ACNNNNGTAYC 2 cut(s) 51, 84
BanII GRGCYC 1 cut(s) 220
BbvI GCAGC 5 cut(s) 34, 90, 285, 294, 337
BccI CCATC 3 cut(s) 64, 420, 443
BfaI CTAG 4 cut(s) 336, 387, 393, 419
BisI GCNGC 5 cut(s) 23, 79, 299, 308, 326
BlsI GCNGC 5 cut(s) 24, 80, 300, 309, 327
BmcAI AGTACT 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 219
BmsI GCATC 2 cut(s) 35, 76
Bpu10I CCTNAGC 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 320
BseGI GGATG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 285
BseXI GCAGC 5 cut(s) 34, 90, 285, 294, 337
BsmI GAATGC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 220
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 2 cut(s) 128, 273
BspACI CCGC 4 cut(s) 9, 89, 97, 211
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 320
BsrGI TGTACA 1 cut(s) 180
BssMI GATC 2 cut(s) 128, 273
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 225
BstAPI GCANNNNNTGC 1 cut(s) 307
BstAUI TGTACA 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 50, 54
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 2 cut(s) 131, 276
BstMBI GATC 2 cut(s) 128, 273
BstMWI GCNNNNNNNGC 4 cut(s) 304, 307, 374, 383
BstNSI RCATGY 1 cut(s) 332
BstV1I GCAGC 5 cut(s) 34, 90, 285, 294, 337
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 358, 372
Cac8I GCNNGC 2 cut(s) 50, 54
Csp6I GTAC 4 cut(s) 181, 192, 332, 390
CviAII CATG 2 cut(s) 257, 329
CviJI RGCY 6 cut(s) 218, 298, 368, 386, 396, 406
CviKI_1 RGCY 6 cut(s) 218, 298, 368, 386, 396, 406
CviQI GTAC 4 cut(s) 181, 192, 332, 390
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 130, 275
DpnII GATC 2 cut(s) 128, 273
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 2 cut(s) 260, 332
FaiI YATR 8 cut(s) 103, 105, 160, 258, 278, 330, 381, 459
FatI CATG 2 cut(s) 256, 328
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 5 cut(s) 23, 79, 299, 308, 326
FokI GGATG 1 cut(s) 399
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 5 cut(s) 23, 79, 299, 308, 326
FspBI CTAG 4 cut(s) 336, 387, 393, 419
GluI GCNGC 5 cut(s) 23, 79, 299, 308, 326
Hin1II CATG 2 cut(s) 260, 332
HinfI GANTC 1 cut(s) 119
HphI GGTGA 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 419, 431
Hpy99I CGWCG 2 cut(s) 30, 86
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 4 cut(s) 107, 239, 301, 325
HpyF10VI GCNNNNNNNGC 4 cut(s) 304, 307, 374, 383
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 2 cut(s) 260, 332
Kzo9I GATC 2 cut(s) 128, 273
LmnI GCTCC 4 cut(s) 6, 19, 75, 223
LpnPI CCDG 3 cut(s) 191, 306, 416
Lsp1109I GCAGC 5 cut(s) 34, 90, 285, 294, 337
LweI GCATC 2 cut(s) 35, 76
MaeI CTAG 4 cut(s) 336, 387, 393, 419
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 130, 275
MbiI CCGCTC 1 cut(s) 9
MboI GATC 2 cut(s) 128, 273
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 3 cut(s) 187, 302, 339
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 3 cut(s) 28, 207, 426
Mph1103I ATGCAT 1 cut(s) 109
MseI TTAA 1 cut(s) 441
MunI CAATTG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 170
MwoI GCNNNNNNNGC 4 cut(s) 304, 307, 374, 383
NdeII GATC 2 cut(s) 128, 273
NlaIII CATG 2 cut(s) 260, 332
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 332
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 5 cut(s) 24, 80, 300, 309, 327
PspN4I GGNNCC 1 cut(s) 219
RsaI GTAC 4 cut(s) 182, 193, 333, 391
RsaNI GTAC 4 cut(s) 181, 192, 332, 390
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 5 cut(s) 23, 79, 299, 308, 326
Sau3AI GATC 2 cut(s) 128, 273
ScaI AGTACT 1 cut(s) 391
SduI GDGCHC 1 cut(s) 220
SetI ASST 8 cut(s) 65, 180, 197, 295, 300, 337, 388, 398
SfaNI GCATC 2 cut(s) 35, 76
Sse9I AATT 3 cut(s) 187, 302, 339
SsiI CCGC 4 cut(s) 9, 89, 97, 211
SspMI CTAG 4 cut(s) 336, 387, 393, 419
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 289
TasI AATT 3 cut(s) 187, 302, 339
TatI WGTACW 2 cut(s) 180, 389
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 2 cut(s) 365, 379
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 5 cut(s) 22, 78, 298, 307, 325
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 3 cut(s) 243, 396, 415
TspRI CASTG 2 cut(s) 365, 379
XapI RAATTY 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 332
XspI CTAG 4 cut(s) 336, 387, 393, 419
ZrmI AGTACT 1 cut(s) 391
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.