Rmu_sc0006255.1_g000004

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006255.1
OG0000519
Physical Location & Seq
Reverse (-)
11228 .. 11738
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006255.1_g000004.1.cds

Sequence Viewer

Length: 447 bp
atgcagcctgcaagagaacacgagtatggacaccagctgatgatggtcactggaaaatcaatgtggatgggagctttgtaccacatcaaattaaaggcgtttgtgcgacatgccaaacaagtggaacttctcgctatcaaggaggggctgaagcttctgtccaattatctggggcaatctacagtggttgagactgattttctcgaggctacaatggacatccaaaatcccagttatgatctctcaccttttgtagctataattgaggatattcgagtgcttttgaatgctaggccagatgtaaaaatttgttttgctcctagatcatgcaacaaggttgcgcatagattagctagtttagcgtttgatgataattatgttgctacttggacgggtgatccgccagcttgtatgttggatgttctagccaaggaccatgttggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

148

Amino Acids

16.62

Weight (kDa)

6.28

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 342
AciI CCGC 1 cut(s) 401
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 6 cut(s) 37, 74, 154, 257, 353, 407
AluI AGCT 6 cut(s) 37, 74, 154, 257, 353, 407
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 306
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 1 cut(s) 433
AsuHPI GGTGA 2 cut(s) 237, 407
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 433
BauI CACGAG 1 cut(s) 20
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 37, 61
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 4 cut(s) 291, 321, 354, 425
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 433
BmrI ACTGGG 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 429
Bse1I ACTGG 2 cut(s) 55, 231
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 3 cut(s) 72, 219, 424
BseNI ACTGG 2 cut(s) 55, 231
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 295
BsiHKCI CYCGRG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 1 cut(s) 295
BsoBI CYCGRG 1 cut(s) 203
Bsp143I GATC 3 cut(s) 238, 323, 397
BspACI CCGC 1 cut(s) 401
BspANI GGCC 1 cut(s) 295
BspPI GGATC 1 cut(s) 392
BsrI ACTGG 2 cut(s) 55, 231
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 3 cut(s) 238, 323, 397
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 429
Bst2BI CACGAG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 9, 405
BstF5I GGATG 3 cut(s) 72, 219, 424
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 3 cut(s) 241, 326, 400
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 3 cut(s) 238, 323, 397
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 16
BstXI CCANNNNNNTGG 2 cut(s) 121, 169
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 3 cut(s) 72, 219, 424
BtsIMutI CAGTG 2 cut(s) 48, 189
Cac8I GCNNGC 2 cut(s) 9, 405
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 79
CviAII CATG 3 cut(s) 110, 327, 437
CviQI GTAC 1 cut(s) 79
DpnI GATC 3 cut(s) 240, 325, 399
DpnII GATC 3 cut(s) 238, 323, 397
EciI GGCGGA 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 3 cut(s) 113, 330, 440
FaiI YATR 9 cut(s) 27, 111, 237, 260, 328, 345, 378, 413, 438
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FatI CATG 3 cut(s) 109, 326, 436
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 3 cut(s) 79, 206, 431
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 4 cut(s) 291, 321, 354, 425
FspI TGCGCA 1 cut(s) 342
GlaI GCGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 295
HhaI GCGC 1 cut(s) 343
Hin1II CATG 3 cut(s) 113, 330, 440
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 152
HphI GGTGA 2 cut(s) 237, 407
Hpy188III TCNNGA 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 4, 11, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
Hsp92II CATG 3 cut(s) 113, 330, 440
HspAI GCGC 1 cut(s) 341
Kzo9I GATC 3 cut(s) 238, 323, 397
LmnI GCTCC 2 cut(s) 71, 322
LpnPI CCDG 7 cut(s) 21, 36, 47, 155, 244, 309, 417
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 4 cut(s) 291, 321, 354, 425
MaeIII GTNAC 1 cut(s) 46
MalI GATC 3 cut(s) 240, 325, 399
MboI GATC 3 cut(s) 238, 323, 397
MluCI AATT 5 cut(s) 89, 163, 261, 306, 373
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 3 cut(s) 136, 199, 259
MseI TTAA 2 cut(s) 92, 445
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 37
Mva1269I GAATGC 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 3 cut(s) 238, 323, 397
NlaIII CATG 3 cut(s) 113, 330, 440
NmuCI GTSAC 1 cut(s) 46
NsbI TGCGCA 1 cut(s) 342
NspI RCATGY 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 203
PctI GAATGC 1 cut(s) 292
PkrI GCNGC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 2 cut(s) 92, 445
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 3 cut(s) 238, 323, 397
Sau96I GGNCC 1 cut(s) 433
SetI ASST 8 cut(s) 39, 76, 156, 250, 259, 339, 355, 409
SfcI CTRYAG 1 cut(s) 180
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 433
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 5 cut(s) 89, 163, 261, 306, 373
SsiI CCGC 1 cut(s) 401
SspMI CTAG 4 cut(s) 291, 321, 354, 425
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 204, 274
TasI AATT 5 cut(s) 89, 163, 261, 306, 373
Tru1I TTAA 2 cut(s) 92, 445
Tru9I TTAA 2 cut(s) 92, 445
TscAI CASTG 2 cut(s) 55, 189
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 46
TspRI CASTG 2 cut(s) 55, 189
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 1 cut(s) 306
XceI RCATGY 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 203
XspI CTAG 4 cut(s) 291, 321, 354, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.