Rorug01G0071500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000519
Physical Location & Seq
Reverse (-)
11669137 .. 11669587
451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0071500.1

Sequence Viewer

Length: 291 bp
ATGGCTAAATGGAAATCCCATCAACTCAGCTTGTTGGCGGTGTGGTGCCAGGTTCACTGGGGATATATCCTCCCCAACCACCTTTTGAAATGCGGCCAATATACAATTCATCGGTCCCAATGCCTCATAACTGTTGGCAAGTTGCACCCTGTCCCCAGCCTTGGTATCCACAGCCTCCGGCAGTCTCTGGTTCTCCGCCTTCCGGATTGGGTTATTCACAACAGCCATTGTTTCCTGTGCAGCCATCTCTACCATCAACAACATCCCCTGGACTTCAATCTTCACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

96

Amino Acids

11.26

Weight (kDa)

9.2

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 45
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 3 cut(s) 38, 93, 196
AcoI YGGCCR 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 161, 202
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 2 cut(s) 88, 277
AjnI CCWGG 2 cut(s) 48, 267
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 187
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 114
AvaII GGWCC 1 cut(s) 114
BanI GGYRCC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 252
BccI CCATC 3 cut(s) 27, 252, 261
BciT130I CCWGG 2 cut(s) 50, 269
BciVI GTATCC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 189
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 2 cut(s) 94, 241
BlsI GCNGC 2 cut(s) 95, 242
Bme1390I CCNGG 2 cut(s) 50, 269
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 2 cut(s) 47, 116
BmrFI CCNGG 2 cut(s) 50, 269
BmrI ACTGGG 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 67
BsaJI CCNNGG 2 cut(s) 160, 267
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 202
Bse1I ACTGG 1 cut(s) 62
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 2 cut(s) 50, 269
BseDI CCNNGG 2 cut(s) 160, 267
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 161, 202
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 252
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 259
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 45
BsiSI CCGG 2 cut(s) 178, 203
BslFI GGGAC 2 cut(s) 100, 137
BslI CCNNNNNNNGG 2 cut(s) 161, 202
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 2 cut(s) 100, 137
BsnI GGCC 1 cut(s) 96
Bsp13I TCCGGA 1 cut(s) 202
BspACI CCGC 3 cut(s) 38, 93, 196
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 39
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 47, 116
BspT107I GGYRCC 1 cut(s) 45
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 160, 267
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 50, 269
Bst4CI ACNGT 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 189
BstNI CCWGG 2 cut(s) 50, 269
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 2 cut(s) 48, 267
BstV1I GCAGC 1 cut(s) 252
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 55
CaiI CAGNNNCTG 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 114
CviAII CATG 1 cut(s) 286
CviJI RGCY 7 cut(s) 5, 30, 96, 159, 174, 225, 243
CviKI_1 RGCY 7 cut(s) 5, 30, 96, 159, 174, 225, 243
DdeI CTNAG 1 cut(s) 26
EaeI YGGCCR 1 cut(s) 94
EciI GGCGGA 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 48, 267
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 289
FaiI YATR 4 cut(s) 66, 102, 128, 287
FaqI GGGAC 2 cut(s) 100, 137
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 94, 241
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 94, 241
GluI GCNGC 2 cut(s) 94, 241
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 96
HapII CCGG 2 cut(s) 178, 203
Hin1II CATG 1 cut(s) 289
HpaII CCGG 2 cut(s) 178, 203
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 145, 240
HpyF3I CTNAG 1 cut(s) 26
Hsp92II CATG 1 cut(s) 289
Kpn2I TCCGGA 1 cut(s) 202
Lsp1109I GCAGC 1 cut(s) 252
MboII GAAGA 1 cut(s) 272
MluCI AATT 1 cut(s) 105
MnlI CCTC 3 cut(s) 80, 134, 185
MroI TCCGGA 1 cut(s) 202
MspI CCGG 2 cut(s) 178, 203
MspR9I CCNGG 2 cut(s) 50, 269
MvaI CCWGG 2 cut(s) 50, 269
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 2 cut(s) 47, 116
NspI RCATGY 1 cut(s) 289
PciI ACATGT 1 cut(s) 285
PkrI GCNGC 2 cut(s) 95, 242
PscI ACATGT 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 48, 267
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 2 cut(s) 48, 267
PspN4I GGNNCC 2 cut(s) 47, 116
PspPI GGNCC 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 187
SatI GCNGC 2 cut(s) 94, 241
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 50, 269
SetI ASST 3 cut(s) 32, 54, 84
SinI GGWCC 1 cut(s) 114
Sse9I AATT 1 cut(s) 105
SsiI CCGC 3 cut(s) 38, 93, 196
StyD4I CCNGG 2 cut(s) 48, 267
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 133
TaqII GACCGA 1 cut(s) 102
TasI AATT 1 cut(s) 105
TauI GCSGC 1 cut(s) 96
TscAI CASTG 1 cut(s) 62
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 114
XceI RCATGY 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.