Rh2AG439400

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000519
Physical Location & Seq
Reverse (-)
65012062 .. 65012349
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG439400.1

Sequence Viewer

Length: 288 bp
ATGGACTGTCGTGTGGAAACAGACTGTCTTGTGGCTGTTTCGAAGATCCAGATGGAGGAGTACCAGAATTTGGAACATGGTAACCTAATTGATGATATTCGAATATGGCTGGAGAGTAGGCCTGGAGTCTCTATTGCCCACACTCCTAGAACTACAAATGCAGTGGCACATCGACTTGCAAGTGAAGCTTATGATTCTGATGATCAACACAATTGGAATGATGTTGTTCCAGAGTTGCTTAGAGATGTTCTAAGCTTTGATTGTAACCATATTTCTTATGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

95

Amino Acids

10.94

Weight (kDa)

4.51

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 5 - 63 1.3e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 70
AclWI GGATC 1 cut(s) 40
AcsI RAATTY 1 cut(s) 67
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 55, 70
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 2 cut(s) 188, 255
AluI AGCT 2 cut(s) 188, 255
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 40
AoxI GGCC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 67
AsuII TTCGAA 2 cut(s) 41, 100
BccI CCATC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 123
BclI TGATCA 2 cut(s) 202, 280
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 123
BpmI CTGGAG 2 cut(s) 131, 144
Bpu14I TTCGAA 2 cut(s) 41, 100
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 70
BseBI CCWGG 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 55, 70
BseRI GAGGAG 1 cut(s) 71
BshFI GGCC 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 55, 70
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 121
Bsp119I TTCGAA 2 cut(s) 41, 100
Bsp143I GATC 3 cut(s) 45, 202, 280
BspANI GGCC 1 cut(s) 121
BspPI GGATC 1 cut(s) 40
BspT104I TTCGAA 2 cut(s) 41, 100
BssMI GATC 3 cut(s) 45, 202, 280
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 8, 26
BstBI TTCGAA 2 cut(s) 41, 100
BstDEI CTNAG 2 cut(s) 239, 251
BstEII GGTNACC 1 cut(s) 80
BstKTI GATC 3 cut(s) 48, 205, 283
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 3 cut(s) 45, 202, 280
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 123
BstPI GGTNACC 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Csp6I GTAC 1 cut(s) 61
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 1 cut(s) 77
CviJI RGCY 5 cut(s) 35, 109, 121, 188, 255
CviKI_1 RGCY 5 cut(s) 35, 109, 121, 188, 255
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 2 cut(s) 239, 251
DpnI GATC 3 cut(s) 47, 204, 282
DpnII GATC 3 cut(s) 45, 202, 280
Eco147I AGGCCT 1 cut(s) 121
Eco91I GGTNACC 1 cut(s) 80
EcoO65I GGTNACC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 121
FaeI CATG 1 cut(s) 80
FaiI YATR 5 cut(s) 78, 106, 192, 270, 279
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FatI CATG 1 cut(s) 76
FbaI TGATCA 2 cut(s) 202, 280
FspBI CTAG 1 cut(s) 147
GsuI CTGGAG 2 cut(s) 131, 144
HaeIII GGCC 1 cut(s) 121
Hin1II CATG 1 cut(s) 80
HindIII AAGCTT 2 cut(s) 186, 253
HinfI GANTC 2 cut(s) 126, 194
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 49, 230
HpyCH4III ACNGT 2 cut(s) 8, 26
HpyCH4V TGCA 2 cut(s) 161, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 239, 251
Hsp92II CATG 1 cut(s) 80
Ksp22I TGATCA 2 cut(s) 202, 280
Kzo9I GATC 3 cut(s) 45, 202, 280
LpnPI CCDG 6 cut(s) 62, 77, 95, 108, 135, 243
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 80, 263
MalI GATC 3 cut(s) 47, 204, 282
MboI GATC 3 cut(s) 45, 202, 280
MboII GAAGA 1 cut(s) 55
MfeI CAATTG 1 cut(s) 211
MflI RGATCY 1 cut(s) 45
MluCI AATT 3 cut(s) 67, 87, 211
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 3 cut(s) 45, 202, 280
NlaIII CATG 1 cut(s) 80
NspV TTCGAA 2 cut(s) 41, 100
PceI AGGCCT 1 cut(s) 121
PfeI GAWTC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 70
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 121
PspEI GGTNACC 1 cut(s) 80
PspGI CCWGG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
Sau3AI GATC 3 cut(s) 45, 202, 280
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 123
SetI ASST 3 cut(s) 87, 190, 257
SfuI TTCGAA 2 cut(s) 41, 100
Sse9I AATT 3 cut(s) 67, 87, 211
SseBI AGGCCT 1 cut(s) 121
SspMI CTAG 1 cut(s) 147
StuI AGGCCT 1 cut(s) 121
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 8, 26
TaqI TCGA 3 cut(s) 41, 100, 172
TasI AATT 3 cut(s) 67, 87, 211
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 1 cut(s) 168
TspRI CASTG 1 cut(s) 168
Van91I CCANNNNNTGG 1 cut(s) 70
XapI RAATTY 1 cut(s) 67
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.