Rmu_sc0000850.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000850.1
OG0000519
Physical Location & Seq
Reverse (-)
21258 .. 21656
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000850.1_g000010.1.cds

Sequence Viewer

Length: 399 bp
ctgcccagcactagggtcaggcctgcttttgctagtctagttgctcacacagcatcccccaaacaatgtgaattatatgccattcgagctggccttgacttgttagcttcactccaagtgcaggatgctgtcgtagaatctgactacattgaggctatagcggaggcttggtgcccggatcattccttgcttgacaacggtggtctggtggatgacatcaaaagagctgcatgtagcttaccattggtgcaaattcaatatgcaccacactcctgcaatatggtggcccatagacttgctagtataggctttgaggctcattgtagcacagtttggtttgatcagatgcctagctgcatcattgatgtattcaacaatgattgtaaacacctcacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

132

Amino Acids

14.42

Weight (kDa)

5.11

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 171
AciI CCGC 1 cut(s) 161
AclWI GGATC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 12, 121
AgsI TTSAA 2 cut(s) 257, 373
AluBI AGCT 5 cut(s) 89, 107, 227, 237, 354
AluI AGCT 5 cut(s) 89, 107, 227, 237, 354
AlwI GGATC 1 cut(s) 186
AoxI GGCC 3 cut(s) 20, 91, 285
ApeKI GCWGC 2 cut(s) 227, 354
ApoI RAATTY 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 286
AsuC2I CCSGG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 214, 341
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 1 cut(s) 176
BfaI CTAG 5 cut(s) 12, 33, 38, 300, 351
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 228, 355
BlsI GCNGC 2 cut(s) 229, 356
Bme1390I CCNGG 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 4 cut(s) 62, 115, 336, 366
BpuMI CCSGG 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 121
BseGI GGATG 3 cut(s) 53, 130, 217
BseLI CCNNNNNNNGG 2 cut(s) 12, 121
BseSI GKGCMC 1 cut(s) 176
BseXI GCAGC 2 cut(s) 214, 341
BseYI CCCAGC 1 cut(s) 5
BsgI GTGCAG 1 cut(s) 140
BshFI GGCC 3 cut(s) 22, 93, 287
BshNI GGYRCC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 12, 121
BsnI GGCC 3 cut(s) 22, 93, 287
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 178, 340
BspACI CCGC 1 cut(s) 161
BspANI GGCC 3 cut(s) 22, 93, 287
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 171
BssMI GATC 2 cut(s) 178, 340
Bst4CI ACNGT 2 cut(s) 200, 331
BstC8I GCNNGC 2 cut(s) 24, 91
BstF5I GGATG 3 cut(s) 53, 130, 217
BstKTI GATC 2 cut(s) 181, 343
BstMBI GATC 2 cut(s) 178, 340
BstMWI GCNNNNNNNGC 2 cut(s) 50, 86
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 214, 341
BsuRI GGCC 3 cut(s) 22, 93, 287
BtsCI GGATG 3 cut(s) 53, 130, 217
Cac8I GCNNGC 2 cut(s) 24, 91
Cfr13I GGNCC 1 cut(s) 286
CviAII CATG 1 cut(s) 231
DpnI GATC 2 cut(s) 180, 342
DpnII GATC 2 cut(s) 178, 340
Eco147I AGGCCT 1 cut(s) 22
FaeI CATG 1 cut(s) 234
FaiI YATR 8 cut(s) 76, 78, 158, 232, 261, 281, 291, 305
FatI CATG 1 cut(s) 230
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 228, 355
FokI GGATG 3 cut(s) 40, 137, 224
Fsp4HI GCNGC 2 cut(s) 228, 355
FspBI CTAG 5 cut(s) 12, 33, 38, 300, 351
GluI GCNGC 2 cut(s) 228, 355
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 3 cut(s) 22, 93, 287
HapII CCGG 1 cut(s) 176
Hin1II CATG 1 cut(s) 234
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 2 cut(s) 142, 345
Hpy8I GTNNAC 1 cut(s) 386
HpyCH4III ACNGT 2 cut(s) 200, 331
HpyCH4V TGCA 6 cut(s) 121, 230, 250, 263, 276, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 86
Hsp92II CATG 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 2 cut(s) 178, 340
LpnPI CCDG 8 cut(s) 4, 19, 36, 75, 107, 189, 191, 286
Lsp1109I GCAGC 2 cut(s) 214, 341
LweI GCATC 4 cut(s) 62, 115, 336, 366
MaeI CTAG 5 cut(s) 12, 33, 38, 300, 351
MalI GATC 2 cut(s) 180, 342
MboI GATC 2 cut(s) 178, 340
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 2 cut(s) 71, 252
MnlI CCTC 3 cut(s) 145, 157, 307
MseI TTAA 1 cut(s) 397
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 50, 86
NciI CCSGG 1 cut(s) 176
NdeII GATC 2 cut(s) 178, 340
NlaIII CATG 1 cut(s) 234
NlaIV GGNNCC 1 cut(s) 173
NspI RCATGY 1 cut(s) 234
PceI AGGCCT 1 cut(s) 22
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 2 cut(s) 229, 356
PspFI CCCAGC 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 397
SatI GCNGC 2 cut(s) 228, 355
Sau3AI GATC 2 cut(s) 178, 340
Sau96I GGNCC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 176
SetI ASST 6 cut(s) 91, 109, 229, 239, 356, 393
SfaNI GCATC 4 cut(s) 62, 115, 336, 366
SfcI CTRYAG 1 cut(s) 156
Sse9I AATT 2 cut(s) 71, 252
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 1 cut(s) 161
SspMI CTAG 5 cut(s) 12, 33, 38, 300, 351
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 200, 331
TaqI TCGA 1 cut(s) 85
TasI AATT 2 cut(s) 71, 252
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 397
Tru9I TTAA 1 cut(s) 397
TseI GCWGC 2 cut(s) 227, 354
XapI RAATTY 1 cut(s) 252
XceI RCATGY 1 cut(s) 234
XspI CTAG 5 cut(s) 12, 33, 38, 300, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.