RLG00000028155

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000519
Physical Location & Seq
Forward (+)
19537211 .. 19538332
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028155

Sequence Viewer

Length: 456 bp
ATGGGCTTTGCATCGGTCTTTTGGGCCAAGGCGCTGGGCCTTGGTCATTCCTCAACTGATGAGGTTGTGAATTGGTTGTGGGCCAGAGCCCATGTCTCGTGGAGACATTCTGGACATAGTTTCCAAGAATATCCGGACCAAGATTGCCTGGTGGCTGTATCTGAAATTCAGTTGGCTGACTATCAAAATCTGGAGTATGGAAGCCTTATTGATGATATAAACAAGTGTGTGTGGCTCGATGGTAGGCCTCAAGTCTTTATTTCTCACAACCCTAAAACTGCAAATGCAGTGGCACATAGACTGGCAAGTAAAGCTTATGAGTCTGTTGATAAGTTTGAATGGCATGATGTTGTTCCAGAAGTGCTTAGAGATGTTCTAAGCTATGATTGTAACCATATTGCACAAGATCAATATATCAGTCCCTCTTTTGATTCAAAAAATAGTATAGATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

152

Amino Acids

17.2

Weight (kDa)

5.18

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 133
AcsI RAATTY 1 cut(s) 165
AgsI TTSAA 2 cut(s) 338, 435
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 2 cut(s) 314, 381
AluI AGCT 2 cut(s) 314, 381
Alw26I GTCTC 2 cut(s) 97, 100
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 4 cut(s) 24, 37, 81, 245
ApoI RAATTY 1 cut(s) 165
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 4 cut(s) 24, 37, 81, 136
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 91
BauI CACGAG 1 cut(s) 97
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 97, 100
BfoI RGCGCY 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 4 cut(s) 24, 37, 81, 136
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 27, 40
BsaWI WCCGGW 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 133
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 27, 40
BseNI ACTGG 1 cut(s) 306
BseYI CCCAGC 1 cut(s) 34
BshFI GGCC 4 cut(s) 26, 39, 83, 247
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 405
BsmAI GTCTC 2 cut(s) 97, 100
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 4 cut(s) 26, 39, 83, 247
Bsp1286I GDGCHC 1 cut(s) 91
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 1 cut(s) 406
BspANI GGCC 4 cut(s) 26, 39, 83, 247
BspEI TCCGGA 1 cut(s) 133
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 27, 40
BssMI GATC 1 cut(s) 406
BssSI CACGAG 1 cut(s) 97
BssT1I CCWWGG 2 cut(s) 27, 40
Bst2BI CACGAG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 365, 377
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 2 cut(s) 97, 100
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 34
BsuRI GGCC 4 cut(s) 26, 39, 83, 247
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 294
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 4 cut(s) 24, 37, 81, 136
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviAII CATG 2 cut(s) 92, 344
DdeI CTNAG 2 cut(s) 365, 377
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eco130I CCWWGG 2 cut(s) 27, 40
Eco147I AGGCCT 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 27, 40
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 2 cut(s) 27, 40
FaeI CATG 2 cut(s) 95, 347
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FaqI GGGAC 1 cut(s) 405
FatI CATG 2 cut(s) 91, 343
FriOI GRGCYC 1 cut(s) 91
GlaI GCGC 1 cut(s) 33
GsaI CCCAGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 4 cut(s) 26, 39, 83, 247
HapII CCGG 1 cut(s) 134
HhaI GCGC 1 cut(s) 34
Hin1II CATG 2 cut(s) 95, 347
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 2 cut(s) 320, 431
HpaII CCGG 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 4 cut(s) 111, 134, 191, 356
HpyCH4V TGCA 4 cut(s) 11, 281, 287, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 365, 377
Hsp92II CATG 2 cut(s) 95, 347
HspAI GCGC 1 cut(s) 32
Kpn2I TCCGGA 1 cut(s) 133
Kzo9I GATC 1 cut(s) 406
LpnPI CCDG 9 cut(s) 20, 96, 97, 134, 147, 161, 176, 287, 369
LweI GCATC 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 389
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 2 cut(s) 70, 165
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 4 cut(s) 55, 61, 258, 433
MroI TCCGGA 1 cut(s) 133
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 1 cut(s) 406
NlaIII CATG 2 cut(s) 95, 347
PceI AGGCCT 1 cut(s) 247
PfeI GAWTC 1 cut(s) 431
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 147
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 4 cut(s) 24, 37, 81, 136
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 4 cut(s) 24, 37, 81, 136
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 91
SetI ASST 3 cut(s) 66, 316, 383
SfaNI GCATC 1 cut(s) 20
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
Sse9I AATT 2 cut(s) 70, 165
SseBI AGGCCT 1 cut(s) 247
StuI AGGCCT 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 2 cut(s) 27, 40
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 4
TasI AATT 2 cut(s) 70, 165
TfiI GAWTC 1 cut(s) 431
TscAI CASTG 1 cut(s) 294
TspRI CASTG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.