Rorug02G0498300

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000519
Physical Location & Seq
Reverse (-)
63114586 .. 63116163
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0498300.1

Sequence Viewer

Length: 753 bp
ATGTTTGGTTTTGGGGAAGAACAAGGATTTCAAGGACCCCTGACCCCGAATATGGATCGCGGTGTTGTTGAGGGTGAAGAAGAGGAGGAGGAAGAAGAACAGGAAGAGAACTCAAGTGATCATAGTAGTTCTCAGATTGAATCAGTAGCTCGTCCTTACGTTCCTTCTCGTTATAAGCTCAAATCTCGGCTTAGGTGGAGTGCTGACCTTCATGCCAGTTTTGTTGATGCTGTCTGTCAGCTTGGTGGCCCTCATAAGGCAACTCCAAAGTCGATTATGCAAATAATGGATGTTAAGGGACTATCGCTTTTCCACGTGAAGAGCCACCTCCAGAAGTACAGACTTGGAAAGTATGGAGTGAAGGAGTGGCGAGATGGGAGTAGTTCCAGAACAGCAGATTATGCAGGTGTGTTTGGACAAAATGCTGCTGGTTTAGAAACTATGGGGTCAATACCACATCAGAAGGATCTAGACCTATACCCTGCATATCATATGACTCAGATTATGCAGCCTAGTTTTGACAACCAACTTGGTAGTTTTGGAAACCAACTTGGTAGCTTTCTGCCTGAGAGTGAAGCCTATTTTGCAACCGGAGACCACCTGATCTCAGCTGGGCATTCAGGAAATTCATCTGTGCAAGATTTCCCAACTTTCGATACAGATGGGAATAACGAGGTTGAGATTTTGGATGATGACCCTGCAGAAACTTATTTGATTCTGGATACTGCTGAAAATGGAAGTGGCAGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

250

Amino Acids

27.57

Weight (kDa)

4.64

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AarI CACCTGC 1 cut(s) 395
Acc36I ACCTGC 2 cut(s) 395, 735
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 60
AclWI GGATC 2 cut(s) 63, 474
AcsI RAATTY 1 cut(s) 625
AcvI CACGTG 1 cut(s) 316
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 52, 256
AgsI TTSAA 2 cut(s) 32, 140
AluBI AGCT 5 cut(s) 149, 178, 241, 558, 611
AluI AGCT 5 cut(s) 149, 178, 241, 558, 611
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 2 cut(s) 63, 474
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 425, 508
ApoI RAATTY 1 cut(s) 625
AspS9I GGNCC 2 cut(s) 35, 248
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 35
BbrPI CACGTG 1 cut(s) 316
BbvI GCAGC 2 cut(s) 412, 520
BccI CCATC 2 cut(s) 368, 656
BciVI GTATCC 1 cut(s) 715
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 2 cut(s) 470, 513
BfmI CTRYAG 1 cut(s) 699
BfuAI ACCTGC 2 cut(s) 395, 735
BfuI GTATCC 1 cut(s) 715
BisI GCNGC 2 cut(s) 426, 509
BlsI GCNGC 2 cut(s) 427, 510
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 248
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 588
BsaWI WCCGGW 1 cut(s) 590
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 256
Bse1I ACTGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 295, 694
BseLI CCNNNNNNNGG 2 cut(s) 52, 256
BseMII CTCAG 4 cut(s) 146, 512, 558, 621
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 2 cut(s) 98, 101
BseXI GCAGC 2 cut(s) 412, 520
BseYI CCCAGC 1 cut(s) 611
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 591
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 52, 256
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 1 cut(s) 588
Bsp143I GATC 4 cut(s) 55, 118, 466, 603
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 4 cut(s) 145, 511, 559, 620
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 703
BspMI ACCTGC 2 cut(s) 395, 735
BspPI GGATC 2 cut(s) 63, 474
BspQI GCTCTTC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 588
BsrI ACTGG 1 cut(s) 216
BssMI GATC 4 cut(s) 55, 118, 466, 603
Bst6I CTCTTC 3 cut(s) 75, 99, 314
BstAPI GCANNNNNTGC 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 316
BstDEI CTNAG 5 cut(s) 132, 191, 498, 567, 607
BstF5I GGATG 2 cut(s) 295, 694
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 4 cut(s) 58, 121, 469, 606
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 4 cut(s) 55, 118, 466, 603
BstMWI GCNNNNNNNGC 2 cut(s) 401, 584
BstSFI CTRYAG 1 cut(s) 699
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 412, 520
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuI GTATCC 1 cut(s) 715
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 2 cut(s) 295, 694
BveI ACCTGC 2 cut(s) 395, 735
Cfr13I GGNCC 2 cut(s) 35, 248
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 212
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 5 cut(s) 132, 191, 498, 567, 607
DpnI GATC 4 cut(s) 57, 120, 468, 605
DpnII GATC 4 cut(s) 55, 118, 466, 603
Eam1104I CTCTTC 3 cut(s) 75, 99, 314
EarI CTCTTC 3 cut(s) 75, 99, 314
Eco31I GGTCTC 1 cut(s) 588
Eco47I GGWCC 1 cut(s) 35
Eco72I CACGTG 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 35
FaeI CATG 1 cut(s) 215
FaqI GGGAC 1 cut(s) 312
FatI CATG 1 cut(s) 211
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 426, 509
FokI GGATG 2 cut(s) 302, 701
Fsp4HI GCNGC 2 cut(s) 426, 509
FspBI CTAG 2 cut(s) 470, 513
GluI GCNGC 2 cut(s) 426, 509
GsaI CCCAGC 1 cut(s) 615
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 249
HapII CCGG 1 cut(s) 591
Hin1II CATG 1 cut(s) 215
HinfI GANTC 3 cut(s) 140, 496, 715
HpaII CCGG 1 cut(s) 591
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 3 cut(s) 135, 462, 501
Hpy188III TCNNGA 6 cut(s) 331, 387, 470, 621, 719, 750
HpyAV CCTTC 4 cut(s) 174, 218, 355, 457
HpyCH4IV ACGT 2 cut(s) 159, 315
HpyCH4V TGCA 7 cut(s) 280, 404, 485, 508, 587, 637, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 584
HpyF3I CTNAG 5 cut(s) 132, 191, 498, 567, 607
HpySE526I ACGT 2 cut(s) 159, 315
Hsp92II CATG 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 4 cut(s) 55, 118, 466, 603
LguI GCTCTTC 1 cut(s) 314
Lsp1109I GCAGC 2 cut(s) 412, 520
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 470, 513
MaeII ACGT 2 cut(s) 159, 315
MalI GATC 4 cut(s) 57, 120, 468, 605
MboI GATC 4 cut(s) 55, 118, 466, 603
MboII GAAGA 7 cut(s) 29, 89, 92, 104, 107, 116, 331
MflI RGATCY 1 cut(s) 466
MluCI AATT 1 cut(s) 625
MlyI GAGTC 1 cut(s) 490
MnlI CCTC 7 cut(s) 64, 76, 79, 82, 261, 338, 667
MseI TTAA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 1 cut(s) 591
Mva1269I GAATGC 1 cut(s) 616
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 401, 584
NdeI CATATG 1 cut(s) 492
NdeII GATC 4 cut(s) 55, 118, 466, 603
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 166
PaqCI CACCTGC 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 314
PctI GAATGC 1 cut(s) 616
PfeI GAWTC 2 cut(s) 140, 715
PkrI GCNGC 2 cut(s) 427, 510
PleI GAGTC 1 cut(s) 490
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
PpsI GAGTC 1 cut(s) 490
Ppu21I YACGTR 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 35
PsiI TTATAA 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 35
PspCI CACGTG 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 611
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 35, 248
PspPPI RGGWCCY 1 cut(s) 35
PstI CTGCAG 1 cut(s) 703
PsuI RGATCY 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SapI GCTCTTC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 426, 509
Sau3AI GATC 4 cut(s) 55, 118, 466, 603
Sau96I GGNCC 2 cut(s) 35, 248
SchI GAGTC 1 cut(s) 490
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 699
SinI GGWCC 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 1 cut(s) 625
SsiI CCGC 1 cut(s) 60
SspMI CTAG 2 cut(s) 470, 513
TaiI ACGT 2 cut(s) 162, 318
TaqI TCGA 2 cut(s) 272, 654
TasI AATT 1 cut(s) 625
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 2 cut(s) 140, 715
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseI GCWGC 2 cut(s) 425, 508
TspDTI ATGAA 2 cut(s) 200, 618
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 1 cut(s) 625
XbaI TCTAGA 1 cut(s) 469
XspI CTAG 2 cut(s) 470, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.