Rh2DG459400

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000519
Physical Location & Seq
Reverse (-)
66380471 .. 66380707
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG459400.1

Sequence Viewer

Length: 237 bp
ATGGAGGAGTACCAGAATTTGGAACATGGTAACCTAATTGATGATATCCGAATATGGCTGGAGAGTAGGCCTGGAGTCTCTATTGCCCACACTCCTAGAACTACAAATGCAGTGGCACATCGACTTGCAAGTGAAGCTTATGAGTCTGATGATCAACACAATTGGAATGATGTTCTTCTAGAGTTGCTTAGAGATGTTCTAAGCTTTGCTTGTAACCATATTACTTATGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

78

Amino Acids

9.06

Weight (kDa)

4.64

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 5 - 46 3.6e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 19
AcsI RAATTY 1 cut(s) 16
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 19
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 137, 204
AluI AGCT 2 cut(s) 137, 204
Alw26I GTCTC 1 cut(s) 82
AoxI GGCC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 72
BclI TGATCA 2 cut(s) 151, 229
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 2 cut(s) 96, 179
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BpmI CTGGAG 2 cut(s) 80, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 20
BshFI GGCC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 151, 229
BspANI GGCC 1 cut(s) 70
BssMI GATC 2 cut(s) 151, 229
Bst2UI CCWGG 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 188, 200
BstEII GGTNACC 1 cut(s) 29
BstKTI GATC 2 cut(s) 154, 232
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 2 cut(s) 151, 229
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 72
BstPI GGTNACC 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 70
BsuRI GGCC 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
Csp6I GTAC 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 1 cut(s) 26
CviJI RGCY 4 cut(s) 58, 70, 137, 204
CviKI_1 RGCY 4 cut(s) 58, 70, 137, 204
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 188, 200
DpnI GATC 2 cut(s) 153, 231
DpnII GATC 2 cut(s) 151, 229
Eco147I AGGCCT 1 cut(s) 70
Eco32I GATATC 1 cut(s) 46
Eco91I GGTNACC 1 cut(s) 29
EcoO65I GGTNACC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 70
EcoRV GATATC 1 cut(s) 46
FaeI CATG 1 cut(s) 29
FaiI YATR 5 cut(s) 27, 55, 141, 219, 228
FalI AAGNNNNNCTT 4 cut(s) 121, 153, 193, 225
FatI CATG 1 cut(s) 25
FbaI TGATCA 2 cut(s) 151, 229
FspBI CTAG 2 cut(s) 96, 179
GsuI CTGGAG 2 cut(s) 80, 93
HaeIII GGCC 1 cut(s) 70
Hin1II CATG 1 cut(s) 29
HindIII AAGCTT 2 cut(s) 135, 202
HinfI GANTC 2 cut(s) 75, 143
Hpy188I TCNGA 2 cut(s) 50, 148
Hpy188III TCNNGA 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 110, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 188, 200
Hsp92II CATG 1 cut(s) 29
Ksp22I TGATCA 2 cut(s) 151, 229
Kzo9I GATC 2 cut(s) 151, 229
LpnPI CCDG 4 cut(s) 26, 44, 57, 84
MaeI CTAG 2 cut(s) 96, 179
MaeIII GTNAC 2 cut(s) 29, 212
MalI GATC 2 cut(s) 153, 231
MboI GATC 2 cut(s) 151, 229
MboII GAAGA 1 cut(s) 167
MfeI CAATTG 1 cut(s) 160
MluCI AATT 3 cut(s) 16, 36, 160
MlyI GAGTC 2 cut(s) 84, 152
MspR9I CCNGG 1 cut(s) 72
MunI CAATTG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 2 cut(s) 151, 229
NlaIII CATG 1 cut(s) 29
PceI AGGCCT 1 cut(s) 70
PflMI CCANNNNNTGG 1 cut(s) 19
PleI GAGTC 2 cut(s) 83, 151
PpsI GAGTC 2 cut(s) 83, 151
Psp6I CCWGG 1 cut(s) 70
PspEI GGTNACC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 70
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 151, 229
SchI GAGTC 2 cut(s) 84, 152
ScrFI CCNGG 1 cut(s) 72
SetI ASST 3 cut(s) 36, 139, 206
Sse9I AATT 3 cut(s) 16, 36, 160
SseBI AGGCCT 1 cut(s) 70
SspMI CTAG 2 cut(s) 96, 179
StuI AGGCCT 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 70
TaqI TCGA 1 cut(s) 121
TasI AATT 3 cut(s) 16, 36, 160
TscAI CASTG 1 cut(s) 117
TspRI CASTG 1 cut(s) 117
Van91I CCANNNNNTGG 1 cut(s) 19
XapI RAATTY 1 cut(s) 16
XbaI TCTAGA 1 cut(s) 178
XspI CTAG 2 cut(s) 96, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.