Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 524 |
| AccB1I | GGYRCC | 2 cut(s) | 188, 1257 |
| AccI | GTMKAC | 1 cut(s) | 762 |
| AccII | CGCG | 1 cut(s) | 96 |
| AciI | CCGC | 7 cut(s) | 115, 173, 219, 296, 390, 635, 644 |
| AclWI | GGATC | 1 cut(s) | 780 |
| AcoI | YGGCCR | 1 cut(s) | 1446 |
| AcsI | RAATTY | 2 cut(s) | 925, 1373 |
| AcuI | CTGAAG | 1 cut(s) | 460 |
| AcvI | CACGTG | 2 cut(s) | 195, 641 |
| AcyI | GRCGYC | 3 cut(s) | 42, 170, 189 |
| AfaI | GTAC | 3 cut(s) | 827, 1305, 1330 |
| AfeI | AGCGCT | 1 cut(s) | 436 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 584, 1384 |
| AgsI | TTSAA | 5 cut(s) | 703, 1202, 1271, 1291, 1384 |
| AjiI | CACGTC | 1 cut(s) | 247 |
| AjnI | CCWGG | 2 cut(s) | 138, 1724 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1216, 1248, 1601, 1633 |
| AleI | CACNNNNGTG | 1 cut(s) | 32 |
| AluBI | AGCT | 9 cut(s) | 121, 350, 378, 416, 492, 520, 947, 1399, 1741 |
| AluI | AGCT | 9 cut(s) | 121, 350, 378, 416, 492, 520, 947, 1399, 1741 |
| Alw21I | GWGCWC | 4 cut(s) | 200, 252, 759, 1150 |
| Alw26I | GTCTC | 4 cut(s) | 144, 511, 913, 1282 |
| AlwI | GGATC | 1 cut(s) | 780 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 834 |
| Aor51HI | AGCGCT | 1 cut(s) | 436 |
| AoxI | GGCC | 3 cut(s) | 177, 586, 1446 |
| ApeKI | GCWGC | 4 cut(s) | 432, 1079, 1242, 1721 |
| ApoI | RAATTY | 2 cut(s) | 925, 1373 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 473 |
| AspLEI | GCGC | 4 cut(s) | 78, 191, 437, 728 |
| AspS9I | GGNCC | 2 cut(s) | 480, 587 |
| AsuHPI | GGTGA | 1 cut(s) | 843 |
| AsuII | TTCGAA | 2 cut(s) | 224, 467 |
| AvaII | GGWCC | 1 cut(s) | 480 |
| BanI | GGYRCC | 2 cut(s) | 188, 1257 |
| BbrPI | CACGTG | 2 cut(s) | 195, 641 |
| BbsI | GAAGAC | 1 cut(s) | 249 |
| Bbv12I | GWGCWC | 4 cut(s) | 200, 252, 759, 1150 |
| BbvI | GCAGC | 4 cut(s) | 444, 1091, 1229, 1733 |
| BccI | CCATC | 6 cut(s) | 284, 653, 849, 853, 1166, 1723 |
| BceAI | ACGGC | 2 cut(s) | 75, 113 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 548, 582 |
| BciT130I | CCWGG | 2 cut(s) | 140, 1726 |
| BciVI | GTATCC | 1 cut(s) | 1543 |
| BcoDI | GTCTC | 4 cut(s) | 144, 511, 913, 1282 |
| BfaI | CTAG | 2 cut(s) | 1406, 1677 |
| BfmI | CTRYAG | 1 cut(s) | 942 |
| BfoI | RGCGCY | 3 cut(s) | 192, 438, 729 |
| BfuAI | ACCTGC | 1 cut(s) | 524 |
| BfuI | GTATCC | 1 cut(s) | 1543 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1694, 1730 |
| BisI | GCNGC | 7 cut(s) | 173, 219, 390, 433, 1080, 1243, 1722 |
| BlsI | GCNGC | 7 cut(s) | 174, 220, 391, 434, 1081, 1244, 1723 |
| Bme1390I | CCNGG | 2 cut(s) | 140, 1726 |
| Bme18I | GGWCC | 1 cut(s) | 480 |
| BmgBI | CACGTC | 1 cut(s) | 247 |
| BmgT120I | GGNCC | 2 cut(s) | 480, 587 |
| BmiI | GGNNCC | 3 cut(s) | 162, 190, 1259 |
| BmrFI | CCNGG | 2 cut(s) | 140, 1726 |
| BmrI | ACTGGG | 1 cut(s) | 1508 |
| BmsI | GCATC | 9 cut(s) | 63, 522, 702, 808, 1018, 1066, 1426, 1507, 1675 |
| BmuI | ACTGGG | 1 cut(s) | 1508 |
| BoxI | GACNNNNGTC | 1 cut(s) | 90 |
| BpiI | GAAGAC | 1 cut(s) | 249 |
| BpmI | CTGGAG | 2 cut(s) | 305, 493 |
| Bpu10I | CCTNAGC | 1 cut(s) | 340 |
| Bpu14I | TTCGAA | 2 cut(s) | 224, 467 |
| BpuEI | CTTGAG | 2 cut(s) | 668, 1443 |
| BsaAI | YACGTR | 2 cut(s) | 195, 641 |
| BsaHI | GRCGYC | 3 cut(s) | 42, 170, 189 |
| BsaI | GGTCTC | 1 cut(s) | 144 |
| BsaJI | CCNNGG | 5 cut(s) | 33, 45, 721, 738, 1341 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 822, 852 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 584, 1384 |
| Bse1I | ACTGG | 5 cut(s) | 322, 458, 1180, 1503, 1648 |
| BseBI | CCWGG | 2 cut(s) | 140, 1726 |
| BseDI | CCNNGG | 5 cut(s) | 33, 45, 721, 738, 1341 |
| BseGI | GGATG | 5 cut(s) | 282, 841, 1174, 1522, 1734 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 584, 1384 |
| BseMII | CTCAG | 3 cut(s) | 431, 1176, 1580 |
| BseNI | ACTGG | 5 cut(s) | 322, 458, 1180, 1503, 1648 |
| BseRI | GAGGAG | 2 cut(s) | 153, 190 |
| BseXI | GCAGC | 4 cut(s) | 444, 1091, 1229, 1733 |
| BseYI | CCCAGC | 1 cut(s) | 346 |
| BsgI | GTGCAG | 4 cut(s) | 379, 770, 1228, 1740 |
| Bsh1236I | CGCG | 1 cut(s) | 96 |
| BshFI | GGCC | 3 cut(s) | 179, 588, 1448 |
| BshNI | GGYRCC | 2 cut(s) | 188, 1257 |
| BsiHKAI | GWGCWC | 4 cut(s) | 200, 252, 759, 1150 |
| BsiSI | CCGG | 1 cut(s) | 1255 |
| BslFI | GGGAC | 1 cut(s) | 278 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 584, 1384 |
| BsmAI | GTCTC | 4 cut(s) | 144, 511, 913, 1282 |
| BsmBI | CGTCTC | 1 cut(s) | 511 |
| BsmFI | GGGAC | 1 cut(s) | 278 |
| BsmI | GAATGC | 1 cut(s) | 1162 |
| BsnI | GGCC | 3 cut(s) | 179, 588, 1448 |
| Bso31I | GGTCTC | 1 cut(s) | 144 |
| Bsp119I | TTCGAA | 2 cut(s) | 224, 467 |
| Bsp1286I | GDGCHC | 4 cut(s) | 200, 252, 759, 1150 |
| Bsp1407I | TGTACA | 1 cut(s) | 825 |
| Bsp143I | GATC | 5 cut(s) | 213, 772, 880, 1485, 1642 |
| Bsp68I | TCGCGA | 1 cut(s) | 96 |
| BspACI | CCGC | 7 cut(s) | 115, 173, 219, 296, 390, 635, 644 |
| BspANI | GGCC | 3 cut(s) | 179, 588, 1448 |
| BspCNI | CTCAG | 3 cut(s) | 430, 1177, 1579 |
| BspFNI | CGCG | 1 cut(s) | 96 |
| BspHI | TCATGA | 1 cut(s) | 933 |
| BspLI | GGNNCC | 3 cut(s) | 162, 190, 1259 |
| BspMI | ACCTGC | 1 cut(s) | 524 |
| BspPI | GGATC | 1 cut(s) | 780 |
| BspT104I | TTCGAA | 2 cut(s) | 224, 467 |
| BspT107I | GGYRCC | 2 cut(s) | 188, 1257 |
| BspTNI | GGTCTC | 1 cut(s) | 144 |
| BsrGI | TGTACA | 1 cut(s) | 825 |
| BsrI | ACTGG | 5 cut(s) | 322, 458, 1180, 1503, 1648 |
| BssECI | CCNNGG | 5 cut(s) | 33, 45, 721, 738, 1341 |
| BssMI | GATC | 5 cut(s) | 213, 772, 880, 1485, 1642 |
| BssNI | GRCGYC | 3 cut(s) | 42, 170, 189 |
| BssT1I | CCWWGG | 2 cut(s) | 721, 1341 |
| Bst2UI | CCWGG | 2 cut(s) | 140, 1726 |
| Bst4CI | ACNGT | 5 cut(s) | 34, 386, 1053, 1145, 1333 |
| Bst6I | CTCTTC | 2 cut(s) | 1315, 1383 |
| BstACI | GRCGYC | 3 cut(s) | 42, 170, 189 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1360 |
| BstAUI | TGTACA | 1 cut(s) | 825 |
| BstBAI | YACGTR | 2 cut(s) | 195, 641 |
| BstBI | TTCGAA | 2 cut(s) | 224, 467 |
| BstC8I | GCNNGC | 8 cut(s) | 119, 177, 300, 376, 394, 1479, 1674, 1695 |
| BstDEI | CTNAG | 6 cut(s) | 340, 417, 521, 778, 1185, 1566 |
| BstDSI | CCRYGG | 1 cut(s) | 33 |
| BstF5I | GGATG | 5 cut(s) | 282, 841, 1174, 1522, 1734 |
| BstFNI | CGCG | 1 cut(s) | 96 |
| BstH2I | RGCGCY | 3 cut(s) | 192, 438, 729 |
| BstHHI | GCGC | 4 cut(s) | 78, 191, 437, 728 |
| BstKTI | GATC | 5 cut(s) | 216, 775, 883, 1488, 1645 |
| BstMAI | GTCTC | 4 cut(s) | 144, 511, 913, 1282 |
| BstMBI | GATC | 5 cut(s) | 213, 772, 880, 1485, 1642 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 195, 441, 685, 1085, 1360, 1445, 1694, 1730 |
| BstNI | CCWGG | 2 cut(s) | 140, 1726 |
| BstNSI | RCATGY | 1 cut(s) | 1354 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 90 |
| BstSCI | CCNGG | 2 cut(s) | 138, 1724 |
| BstSFI | CTRYAG | 1 cut(s) | 942 |
| BstUI | CGCG | 1 cut(s) | 96 |
| BstV1I | GCAGC | 4 cut(s) | 444, 1091, 1229, 1733 |
| BstV2I | GAAGAC | 1 cut(s) | 249 |
| BstX2I | RGATCY | 1 cut(s) | 772 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1579 |
| BstYI | RGATCY | 1 cut(s) | 772 |
| BsuI | GTATCC | 1 cut(s) | 1543 |
| BsuRI | GGCC | 3 cut(s) | 179, 588, 1448 |
| BtgI | CCRYGG | 1 cut(s) | 33 |
| BtrI | CACGTC | 1 cut(s) | 247 |
| BtsCI | GGATG | 5 cut(s) | 282, 841, 1174, 1522, 1734 |
| BtsI | GCAGTG | 1 cut(s) | 554 |
| BtsIMutI | CAGTG | 3 cut(s) | 391, 554, 1655 |
| BtuMI | TCGCGA | 1 cut(s) | 96 |
| BveI | ACCTGC | 1 cut(s) | 524 |
| Cac8I | GCNNGC | 8 cut(s) | 119, 177, 300, 376, 394, 1479, 1674, 1695 |
| CaiI | CAGNNNCTG | 1 cut(s) | 834 |
| CciI | TCATGA | 1 cut(s) | 933 |
| CfoI | GCGC | 4 cut(s) | 78, 191, 437, 728 |
| Cfr13I | GGNCC | 2 cut(s) | 480, 587 |
| CseI | GACGC | 4 cut(s) | 50, 178, 433, 1085 |
| Csp6I | GTAC | 3 cut(s) | 826, 1304, 1329 |
| CviAII | CATG | 6 cut(s) | 133, 934, 1123, 1351, 1468, 1529 |
| CviQI | GTAC | 3 cut(s) | 826, 1304, 1329 |
| DdeI | CTNAG | 6 cut(s) | 340, 417, 521, 778, 1185, 1566 |
| DinI | GGCGCC | 1 cut(s) | 190 |
| DpnI | GATC | 5 cut(s) | 215, 774, 882, 1487, 1644 |
| DpnII | GATC | 5 cut(s) | 213, 772, 880, 1485, 1642 |
| EaeI | YGGCCR | 1 cut(s) | 1446 |
| Eam1104I | CTCTTC | 2 cut(s) | 1315, 1383 |
| EarI | CTCTTC | 2 cut(s) | 1315, 1383 |
| EciI | GGCGGA | 1 cut(s) | 624 |
| Eco130I | CCWWGG | 2 cut(s) | 721, 1341 |
| Eco31I | GGTCTC | 1 cut(s) | 144 |
| Eco47I | GGWCC | 1 cut(s) | 480 |
| Eco47III | AGCGCT | 1 cut(s) | 436 |
| Eco57I | CTGAAG | 1 cut(s) | 460 |
| Eco72I | CACGTG | 2 cut(s) | 195, 641 |
| EcoO109I | RGGNCCY | 1 cut(s) | 480 |
| EcoRI | GAATTC | 1 cut(s) | 1373 |
| EcoRII | CCWGG | 2 cut(s) | 138, 1724 |
| EcoT14I | CCWWGG | 2 cut(s) | 721, 1341 |
| EcoT22I | ATGCAT | 1 cut(s) | 413 |
| EgeI | GGCGCC | 1 cut(s) | 190 |
| EheI | GGCGCC | 1 cut(s) | 190 |
| ErhI | CCWWGG | 2 cut(s) | 721, 1341 |
| Esp3I | CGTCTC | 1 cut(s) | 511 |
| FaeI | CATG | 6 cut(s) | 136, 937, 1126, 1354, 1471, 1532 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 761, 793 |
| FaqI | GGGAC | 1 cut(s) | 278 |
| FatI | CATG | 6 cut(s) | 132, 933, 1122, 1350, 1467, 1528 |
| FauI | CCCGC | 1 cut(s) | 303 |
| FblI | GTMKAC | 1 cut(s) | 762 |
| Fnu4HI | GCNGC | 7 cut(s) | 173, 219, 390, 433, 1080, 1243, 1722 |
| FokI | GGATG | 5 cut(s) | 269, 828, 1181, 1529, 1741 |
| Fsp4HI | GCNGC | 7 cut(s) | 173, 219, 390, 433, 1080, 1243, 1722 |
| FspBI | CTAG | 2 cut(s) | 1406, 1677 |
| GlaI | GCGC | 4 cut(s) | 77, 190, 436, 727 |
| GluI | GCNGC | 7 cut(s) | 173, 219, 390, 433, 1080, 1243, 1722 |
| GsaI | CCCAGC | 1 cut(s) | 350 |
| GsuI | CTGGAG | 2 cut(s) | 305, 493 |
| HaeII | RGCGCY | 3 cut(s) | 192, 438, 729 |
| HaeIII | GGCC | 3 cut(s) | 179, 588, 1448 |
| HapII | CCGG | 1 cut(s) | 1255 |
| HgaI | GACGC | 4 cut(s) | 50, 178, 433, 1085 |
| HhaI | GCGC | 4 cut(s) | 78, 191, 437, 728 |
| Hin1I | GRCGYC | 3 cut(s) | 42, 170, 189 |
| Hin1II | CATG | 6 cut(s) | 136, 937, 1126, 1354, 1471, 1532 |
| Hin6I | GCGC | 4 cut(s) | 76, 189, 435, 726 |
| HinP1I | GCGC | 4 cut(s) | 76, 189, 435, 726 |
| HincII | GTYRAC | 4 cut(s) | 448, 735, 862, 1141 |
| HindII | GTYRAC | 4 cut(s) | 448, 735, 862, 1141 |
| HindIII | AAGCTT | 3 cut(s) | 376, 1397, 1739 |
| HinfI | GANTC | 4 cut(s) | 647, 672, 703, 831 |
| HpaII | CCGG | 1 cut(s) | 1255 |
| HphI | GGTGA | 1 cut(s) | 843 |
| Hpy166II | GTNNAC | 8 cut(s) | 37, 448, 547, 735, 763, 862, 1141, 1306 |
| Hpy188I | TCNGA | 8 cut(s) | 85, 149, 168, 241, 1057, 1152, 1186, 1642 |
| Hpy188III | TCNNGA | 8 cut(s) | 70, 95, 206, 548, 934, 1336, 1406, 1460 |
| Hpy8I | GTNNAC | 8 cut(s) | 37, 448, 547, 735, 763, 862, 1141, 1306 |
| Hpy99I | CGWCG | 4 cut(s) | 44, 96, 172, 1596 |
| HpyAV | CCTTC | 3 cut(s) | 246, 484, 1112 |
| HpyCH4III | ACNGT | 5 cut(s) | 34, 386, 1053, 1145, 1333 |
| HpyCH4IV | ACGT | 4 cut(s) | 194, 246, 640, 1068 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 195, 441, 685, 1085, 1360, 1445, 1694, 1730 |
| HpyF3I | CTNAG | 6 cut(s) | 340, 417, 521, 778, 1185, 1566 |
| HpySE526I | ACGT | 4 cut(s) | 194, 246, 640, 1068 |
| Hsp92I | GRCGYC | 3 cut(s) | 42, 170, 189 |
| Hsp92II | CATG | 6 cut(s) | 136, 937, 1126, 1354, 1471, 1532 |
| HspAI | GCGC | 4 cut(s) | 76, 189, 435, 726 |
| KasI | GGCGCC | 1 cut(s) | 188 |
| Kzo9I | GATC | 5 cut(s) | 213, 772, 880, 1485, 1642 |
| LmnI | GCTCC | 3 cut(s) | 166, 203, 255 |
| Lsp1109I | GCAGC | 4 cut(s) | 444, 1091, 1229, 1733 |
| LweI | GCATC | 9 cut(s) | 63, 522, 702, 808, 1018, 1066, 1426, 1507, 1675 |
| MaeI | CTAG | 2 cut(s) | 1406, 1677 |
| MaeII | ACGT | 4 cut(s) | 194, 246, 640, 1068 |
| MaeIII | GTNAC | 3 cut(s) | 456, 799, 1227 |
| MalI | GATC | 5 cut(s) | 215, 774, 882, 1487, 1644 |
| MboI | GATC | 5 cut(s) | 213, 772, 880, 1485, 1642 |
| MboII | GAAGA | 6 cut(s) | 254, 351, 623, 1302, 1394, 1400 |
| MflI | RGATCY | 1 cut(s) | 772 |
| MhlI | GDGCHC | 4 cut(s) | 200, 252, 759, 1150 |
| Mly113I | GGCGCC | 1 cut(s) | 189 |
| MlyI | GAGTC | 1 cut(s) | 825 |
| MmeI | TCCRAC | 2 cut(s) | 191, 1596 |
| Mph1103I | ATGCAT | 1 cut(s) | 413 |
| MroXI | GAANNNNTTC | 1 cut(s) | 473 |
| MseI | TTAA | 8 cut(s) | 405, 617, 666, 768, 1008, 1128, 1395, 1743 |
| MslI | CAYNNNNRTG | 1 cut(s) | 32 |
| MspA1I | CMGCKG | 1 cut(s) | 175 |
| MspI | CCGG | 1 cut(s) | 1255 |
| MspR9I | CCNGG | 2 cut(s) | 140, 1726 |
| Mva1269I | GAATGC | 1 cut(s) | 1162 |
| MvaI | CCWGG | 2 cut(s) | 140, 1726 |
| MvnI | CGCG | 1 cut(s) | 96 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 195, 441, 685, 1085, 1360, 1445, 1694, 1730 |
| NarI | GGCGCC | 1 cut(s) | 189 |
| NdeII | GATC | 5 cut(s) | 213, 772, 880, 1485, 1642 |
| NlaIII | CATG | 6 cut(s) | 136, 937, 1126, 1354, 1471, 1532 |
| NlaIV | GGNNCC | 3 cut(s) | 162, 190, 1259 |
| NmeAIII | GCCGAG | 1 cut(s) | 70 |
| NmuCI | GTSAC | 1 cut(s) | 456 |
| NruI | TCGCGA | 1 cut(s) | 96 |
| NsiI | ATGCAT | 1 cut(s) | 413 |
| NspI | RCATGY | 1 cut(s) | 1354 |
| NspV | TTCGAA | 2 cut(s) | 224, 467 |
| OliI | CACNNNNGTG | 1 cut(s) | 32 |
| PagI | TCATGA | 1 cut(s) | 933 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 501 |
| PctI | GAATGC | 1 cut(s) | 1162 |
| PdmI | GAANNNNTTC | 1 cut(s) | 473 |
| PfeI | GAWTC | 3 cut(s) | 647, 672, 703 |
| PkrI | GCNGC | 7 cut(s) | 174, 220, 391, 434, 1081, 1244, 1723 |
| PleI | GAGTC | 1 cut(s) | 825 |
| PluTI | GGCGCC | 1 cut(s) | 192 |
| PmaCI | CACGTG | 2 cut(s) | 195, 641 |
| PmlI | CACGTG | 2 cut(s) | 195, 641 |
| PpsI | GAGTC | 1 cut(s) | 825 |
| Ppu21I | YACGTR | 2 cut(s) | 195, 641 |
| PpuMI | RGGWCCY | 1 cut(s) | 480 |
| PshAI | GACNNNNGTC | 1 cut(s) | 90 |
| Psp5II | RGGWCCY | 1 cut(s) | 480 |
| Psp6I | CCWGG | 2 cut(s) | 138, 1724 |
| PspCI | CACGTG | 2 cut(s) | 195, 641 |
| PspFI | CCCAGC | 1 cut(s) | 346 |
| PspGI | CCWGG | 2 cut(s) | 138, 1724 |
| PspN4I | GGNNCC | 3 cut(s) | 162, 190, 1259 |
| PspPI | GGNCC | 2 cut(s) | 480, 587 |
| PspPPI | RGGWCCY | 1 cut(s) | 480 |
| PstNI | CAGNNNCTG | 1 cut(s) | 834 |
| PsuI | RGATCY | 1 cut(s) | 772 |
| RruI | TCGCGA | 1 cut(s) | 96 |
| RsaI | GTAC | 3 cut(s) | 827, 1305, 1330 |
| RsaNI | GTAC | 3 cut(s) | 826, 1304, 1329 |
| RseI | CAYNNNNRTG | 1 cut(s) | 32 |
| SaqAI | TTAA | 8 cut(s) | 405, 617, 666, 768, 1008, 1128, 1395, 1743 |
| SatI | GCNGC | 7 cut(s) | 173, 219, 390, 433, 1080, 1243, 1722 |
| Sau3AI | GATC | 5 cut(s) | 213, 772, 880, 1485, 1642 |
| Sau96I | GGNCC | 2 cut(s) | 480, 587 |
| SchI | GAGTC | 1 cut(s) | 825 |
| ScrFI | CCNGG | 2 cut(s) | 140, 1726 |
| SduI | GDGCHC | 4 cut(s) | 200, 252, 759, 1150 |
| SfaNI | GCATC | 9 cut(s) | 63, 522, 702, 808, 1018, 1066, 1426, 1507, 1675 |
| SfcI | CTRYAG | 1 cut(s) | 942 |
| SfoI | GGCGCC | 1 cut(s) | 190 |
| SfuI | TTCGAA | 2 cut(s) | 224, 467 |
| SinI | GGWCC | 1 cut(s) | 480 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 32 |
| SmlI | CTYRAG | 2 cut(s) | 683, 1458 |
| SmoI | CTYRAG | 2 cut(s) | 683, 1458 |
| SsiI | CCGC | 7 cut(s) | 115, 173, 219, 296, 390, 635, 644 |
| SspDI | GGCGCC | 1 cut(s) | 188 |
| SspMI | CTAG | 2 cut(s) | 1406, 1677 |
| StyD4I | CCNGG | 2 cut(s) | 138, 1724 |
| StyI | CCWWGG | 2 cut(s) | 721, 1341 |
| TaaI | ACNGT | 5 cut(s) | 34, 386, 1053, 1145, 1333 |
| TaiI | ACGT | 4 cut(s) | 197, 249, 643, 1071 |
| TatI | WGTACW | 2 cut(s) | 825, 1303 |
| TauI | GCSGC | 3 cut(s) | 175, 221, 392 |
| TfiI | GAWTC | 3 cut(s) | 647, 672, 703 |
| Tru1I | TTAA | 8 cut(s) | 405, 617, 666, 768, 1008, 1128, 1395, 1743 |
| Tru9I | TTAA | 8 cut(s) | 405, 617, 666, 768, 1008, 1128, 1395, 1743 |
| TscAI | CASTG | 3 cut(s) | 391, 561, 1655 |
| TseFI | GTSAC | 1 cut(s) | 456 |
| TseI | GCWGC | 4 cut(s) | 432, 1079, 1242, 1721 |
| Tsp45I | GTSAC | 1 cut(s) | 456 |
| TspDTI | ATGAA | 7 cut(s) | 351, 635, 919, 950, 1131, 1169, 1622 |
| TspGWI | ACGGA | 2 cut(s) | 344, 1627 |
| TspRI | CASTG | 3 cut(s) | 391, 561, 1655 |
| VpaK11BI | GGWCC | 1 cut(s) | 480 |
| XapI | RAATTY | 2 cut(s) | 925, 1373 |
| XbaI | TCTAGA | 1 cut(s) | 1405 |
| XceI | RCATGY | 1 cut(s) | 1354 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 31 |
| XmiI | GTMKAC | 1 cut(s) | 762 |
| XmnI | GAANNNNTTC | 1 cut(s) | 473 |
| XspI | CTAG | 2 cut(s) | 1406, 1677 |
| Zsp2I | ATGCAT | 1 cut(s) | 413 |