Rorug02G0335100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000519
Physical Location & Seq
Forward (+)
41706671 .. 41708696
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0335100.1

Sequence Viewer

Length: 903 bp
ATGGATGAACTTCCTTTCATGCATGTTGAAGGGGATGGGTTTAAGGAGTTTGTGGAAGAGTTGCAGCCTCAGTGGCCAAGACTGAAGAGAAAAGAGGTTGCTAGAGGAGTGTGGGAGTTGTATCAAATTGAGAAAGCTAAGATGATGAGTGAGTTTGCTGCTCACTCAACAAGAGGGAGCATAACAACGGATACTTGGACGAGTATCCAGAACATAAACTACATGGTAGTCACTGCCCAATTACTATCTTCGATTGAAATCCAATTTTGGAGAACAACCGTCATGGATGTTGCTATTGTACACACCTTGGCGAAAAAGAGAGAAGAATGCCATCCTCAAAAAACTGTCCTCAAATGTTTAGTCACCTACTCACCTACCGAAACCACCGGAGCGGCTAAACCCTTGGAACCCAACACAACCCTCCACTCTCCACTCTACTTTCCGCCCTTCACCGCCGACCGCCGCGGTTTCATCGCAAAACGGGCTGACGAATCGCCGATAGTTAGGGAAATCTCCATTATAGTCATTGAGGTTGGAGCAGCAGTAATGACAACCAGAATATGTGTTGCGATTCGATCTTTTGAGAAACACCCATTGGGACTTTTGCCTTGCACGCGGAGGATTCAGTTGCCTGACACACGCGTCTTATATACTGTGTTACGATCGCCTCATATTGATAAGAAGTCCAGAGAACAGTTTCATATGATAACCAAGAAACAACTTTTGGTCATAGACACAAAAGCAAATGAGTTGCAAAAGAAGTTCTTTTGGTTAAAACGCCAGCGTATACTTGGAGCTCAATATGAAATTATATTCAACCCCAAGACCCGTTTGGATAAGGGAAAACTCCAGGCTTTGGTTAATAAAGAAACTGACACAACTCCTGCAGCAGAATTGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

300

Amino Acids

34.5

Weight (kDa)

9.41

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S10 PF00338 203 - 254 3.9e-09 Ribosomal protein S10p/S20e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 641
AccB7I CCANNNNNTGG 1 cut(s) 856
AccBSI CCGCTC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 787
AccII CGCG 3 cut(s) 465, 616, 642
AciI CCGC 7 cut(s) 392, 443, 453, 460, 463, 465, 616
AcoI YGGCCR 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 856
AflIII ACRYGT 1 cut(s) 640
AgsI TTSAA 3 cut(s) 29, 257, 817
AjnI CCWGG 1 cut(s) 849
AjuI GAANNNNNNNTTGG 4 cut(s) 578, 610, 707, 739
AluBI AGCT 2 cut(s) 137, 797
AluI AGCT 2 cut(s) 137, 797
Alw21I GWGCWC 1 cut(s) 799
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 4 cut(s) 64, 158, 539, 887
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
Asp700I GAANNNNTTC 1 cut(s) 696
AsuHPI GGTGA 3 cut(s) 355, 363, 442
BalI TGGCCA 1 cut(s) 76
BanII GRGCYC 1 cut(s) 799
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 4 cut(s) 76, 145, 551, 899
BccI CCATC 2 cut(s) 29, 339
BciT130I CCWGG 1 cut(s) 851
BciVI GTATCC 2 cut(s) 184, 215
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 885
BfuI GTATCC 2 cut(s) 184, 215
BglI GCCNNNNNGGC 1 cut(s) 73
BisI GCNGC 6 cut(s) 65, 159, 393, 463, 540, 888
BlsI GCNGC 6 cut(s) 66, 160, 394, 464, 541, 889
Bme1390I CCNGG 1 cut(s) 851
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 851
BpmI CTGGAG 1 cut(s) 833
BsaBI GATNNNNATC 1 cut(s) 257
BsaJI CCNNGG 3 cut(s) 306, 402, 463
BsaWI WCCGGW 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 1 cut(s) 856
Bse8I GATNNNNATC 1 cut(s) 257
BseBI CCWGG 1 cut(s) 851
BseDI CCNNGG 3 cut(s) 306, 402, 463
BseGI GGATG 4 cut(s) 10, 40, 292, 331
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 856
BseMII CTCAG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 4 cut(s) 76, 145, 551, 899
Bsh1236I CGCG 3 cut(s) 465, 616, 642
Bsh1285I CGRYCG 2 cut(s) 460, 665
BshFI GGCC 1 cut(s) 76
BsiEI CGRYCG 2 cut(s) 460, 665
BsiHKAI GWGCWC 1 cut(s) 799
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 1 cut(s) 612
BslI CCNNNNNNNGG 1 cut(s) 856
BsmFI GGGAC 1 cut(s) 612
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 799
Bsp1407I TGTACA 1 cut(s) 298
Bsp143I GATC 2 cut(s) 575, 662
BspACI CCGC 7 cut(s) 392, 443, 453, 460, 463, 465, 616
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 3 cut(s) 465, 616, 642
BspLI GGNNCC 1 cut(s) 408
BspMAI CTGCAG 1 cut(s) 889
BsrBI CCGCTC 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 298
BssECI CCNNGG 3 cut(s) 306, 402, 463
BssMI GATC 2 cut(s) 575, 662
BssNAI GTATAC 1 cut(s) 788
BssT1I CCWWGG 2 cut(s) 306, 402
Bst1107I GTATAC 1 cut(s) 788
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 4 cut(s) 280, 346, 655, 696
Bst6I CTCTTC 2 cut(s) 51, 80
BstAUI TGTACA 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 614, 782
BstDEI CTNAG 2 cut(s) 69, 138
BstDSI CCRYGG 1 cut(s) 463
BstF5I GGATG 4 cut(s) 10, 40, 292, 331
BstFNI CGCG 3 cut(s) 465, 616, 642
BstKTI GATC 2 cut(s) 578, 665
BstMBI GATC 2 cut(s) 575, 662
BstMCI CGRYCG 2 cut(s) 460, 665
BstMWI GCNNNNNNNGC 3 cut(s) 73, 482, 613
BstNI CCWGG 1 cut(s) 851
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 849
BstSFI CTRYAG 1 cut(s) 885
BstUI CGCG 3 cut(s) 465, 616, 642
BstV1I GCAGC 4 cut(s) 76, 145, 551, 899
BstZ17I GTATAC 1 cut(s) 788
BsuI GTATCC 2 cut(s) 184, 215
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 463
BtgZI GCGATG 1 cut(s) 457
BtsCI GGATG 4 cut(s) 10, 40, 292, 331
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 77, 231
Cac8I GCNNGC 2 cut(s) 614, 782
Cfr42I CCGCGG 1 cut(s) 466
CseI GACGC 1 cut(s) 631
Csp6I GTAC 1 cut(s) 299
CviAII CATG 4 cut(s) 19, 23, 223, 283
CviJI RGCY 7 cut(s) 67, 76, 137, 395, 485, 797, 854
CviKI_1 RGCY 7 cut(s) 67, 76, 137, 395, 485, 797, 854
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 2 cut(s) 69, 138
DpnI GATC 2 cut(s) 577, 664
DpnII GATC 2 cut(s) 575, 662
DrdI GACNNNNNNGTC 1 cut(s) 641
DseDI GACNNNNNNGTC 1 cut(s) 641
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 51, 80
EarI CTCTTC 2 cut(s) 51, 80
EciI GGCGGA 1 cut(s) 432
Ecl136II GAGCTC 1 cut(s) 797
Eco130I CCWWGG 2 cut(s) 306, 402
Eco24I GRGCYC 1 cut(s) 799
Eco53kI GAGCTC 1 cut(s) 797
Eco57I CTGAAG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 797
EcoRII CCWGG 1 cut(s) 849
EcoT14I CCWWGG 2 cut(s) 306, 402
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 799
ErhI CCWWGG 2 cut(s) 306, 402
FaeI CATG 4 cut(s) 22, 26, 226, 286
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 1 cut(s) 612
FatI CATG 4 cut(s) 18, 22, 222, 282
FauNDI CATATG 1 cut(s) 702
FblI GTMKAC 1 cut(s) 787
Fnu4HI GCNGC 6 cut(s) 65, 159, 393, 463, 540, 888
FokI GGATG 4 cut(s) 17, 47, 299, 318
FriOI GRGCYC 1 cut(s) 799
Fsp4HI GCNGC 6 cut(s) 65, 159, 393, 463, 540, 888
FspBI CTAG 1 cut(s) 102
GluI GCNGC 6 cut(s) 65, 159, 393, 463, 540, 888
GsuI CTGGAG 1 cut(s) 833
HaeIII GGCC 1 cut(s) 76
HapII CCGG 1 cut(s) 387
HgaI GACGC 1 cut(s) 631
Hin1II CATG 4 cut(s) 22, 26, 226, 286
HinfI GANTC 3 cut(s) 491, 571, 622
HpaII CCGG 1 cut(s) 387
HphI GGTGA 3 cut(s) 355, 363, 442
Hpy166II GTNNAC 2 cut(s) 301, 788
Hpy188III TCNNGA 2 cut(s) 208, 687
Hpy8I GTNNAC 2 cut(s) 301, 788
HpyAV CCTTC 2 cut(s) 23, 457
HpyCH4III ACNGT 4 cut(s) 280, 346, 655, 696
HpyCH4V TGCA 5 cut(s) 22, 64, 612, 754, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 482, 613
HpyF3I CTNAG 2 cut(s) 69, 138
Hsp92II CATG 4 cut(s) 22, 26, 226, 286
KspI CCGCGG 1 cut(s) 466
Kzo9I GATC 2 cut(s) 575, 662
LmnI GCTCC 4 cut(s) 177, 389, 536, 794
LpnPI CCDG 9 cut(s) 221, 400, 568, 645, 700, 794, 836, 863, 897
Lsp1109I GCAGC 4 cut(s) 76, 145, 551, 899
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 229, 361, 657
MalI GATC 2 cut(s) 577, 664
MbiI CCGCTC 1 cut(s) 392
MboI GATC 2 cut(s) 575, 662
MboII GAAGA 4 cut(s) 68, 97, 240, 335
MhlI GDGCHC 1 cut(s) 799
MlsI TGGCCA 1 cut(s) 76
MluCI AATT 5 cut(s) 126, 239, 263, 807, 893
MluI ACGCGT 1 cut(s) 640
MluNI TGGCCA 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 514
Mox20I TGGCCA 1 cut(s) 76
Mph1103I ATGCAT 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 696
MscI TGGCCA 1 cut(s) 76
MseI TTAA 3 cut(s) 42, 773, 861
Msp20I TGGCCA 1 cut(s) 76
MspA1I CMGCKG 1 cut(s) 465
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 1 cut(s) 851
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 1 cut(s) 851
MvnI CGCG 3 cut(s) 465, 616, 642
MwoI GCNNNNNNNGC 3 cut(s) 73, 482, 613
NdeI CATATG 1 cut(s) 702
NdeII GATC 2 cut(s) 575, 662
NlaIII CATG 4 cut(s) 22, 26, 226, 286
NlaIV GGNNCC 1 cut(s) 408
NmuCI GTSAC 2 cut(s) 229, 361
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 1 cut(s) 26
PctI GAATGC 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 696
PfeI GAWTC 3 cut(s) 491, 571, 622
PflMI CCANNNNNTGG 1 cut(s) 856
PkrI GCNGC 6 cut(s) 66, 160, 394, 464, 541, 889
Ple19I CGATCG 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 799
Psp6I CCWGG 1 cut(s) 849
PspGI CCWGG 1 cut(s) 849
PspN4I GGNNCC 1 cut(s) 408
PsrI GAACNNNNNNTAC 2 cut(s) 203, 235
PstI CTGCAG 1 cut(s) 889
PvuI CGATCG 1 cut(s) 665
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
SacI GAGCTC 1 cut(s) 799
SacII CCGCGG 1 cut(s) 466
SaqAI TTAA 3 cut(s) 42, 773, 861
SatI GCNGC 6 cut(s) 65, 159, 393, 463, 540, 888
Sau3AI GATC 2 cut(s) 575, 662
ScrFI CCNGG 1 cut(s) 851
SduI GDGCHC 1 cut(s) 799
SetI ASST 7 cut(s) 99, 139, 308, 368, 376, 534, 799
SfcI CTRYAG 1 cut(s) 885
Sfr303I CCGCGG 1 cut(s) 466
SgrBI CCGCGG 1 cut(s) 466
Sse9I AATT 5 cut(s) 126, 239, 263, 807, 893
SsiI CCGC 7 cut(s) 392, 443, 453, 460, 463, 465, 616
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 799
StyD4I CCNGG 1 cut(s) 849
StyI CCWWGG 2 cut(s) 306, 402
TaaI ACNGT 4 cut(s) 280, 346, 655, 696
TaqI TCGA 2 cut(s) 251, 574
TasI AATT 5 cut(s) 126, 239, 263, 807, 893
TatI WGTACW 1 cut(s) 298
TauI GCSGC 2 cut(s) 395, 465
TfiI GAWTC 3 cut(s) 491, 571, 622
Tru1I TTAA 3 cut(s) 42, 773, 861
Tru9I TTAA 3 cut(s) 42, 773, 861
TscAI CASTG 2 cut(s) 77, 238
TseFI GTSAC 2 cut(s) 229, 361
TseI GCWGC 4 cut(s) 64, 158, 539, 887
Tsp45I GTSAC 2 cut(s) 229, 361
TspDTI ATGAA 5 cut(s) 7, 21, 460, 689, 819
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 2 cut(s) 77, 238
Van91I CCANNNNNTGG 1 cut(s) 856
XceI RCATGY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 2 cut(s) 788, 829
XmiI GTMKAC 1 cut(s) 787
XmnI GAANNNNTTC 1 cut(s) 696
XspI CTAG 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.