Rmu_sc0006812.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006812.1
OG0000519
Physical Location & Seq
Forward (+)
1 .. 283
283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006812.1_g000001.1.cds

Sequence Viewer

Length: 283 bp
tccaaggcaaccggttgttattgaaacagactgcttggaggccactctggacctcaaaaatcccagatttgatctactggcgtatgcagcaataatggctgatattcatgctatgctggaggccaaactggaactgaaagtgtgttttgctcctagaacttgtaatggtgtggctcaccgattggctagtctagcttttgatgagagtgatagacatgtatggagagatactcctcctgaatgtatcctagatgtagtagcccgagattataactcaggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

93

Amino Acids

10.42

Weight (kDa)

5.0

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 271
AflIII ACRYGT 1 cut(s) 215
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 1 cut(s) 24
AluBI AGCT 1 cut(s) 195
AluI AGCT 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 2 cut(s) 40, 121
ApeKI GCWGC 1 cut(s) 87
AsiGI ACCGGT 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 262
AvaII GGWCC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 99
BciVI GTATCC 1 cut(s) 255
BfaI CTAG 4 cut(s) 154, 187, 192, 249
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BpmI CTGGAG 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 3
BsaWI WCCGGW 1 cut(s) 11
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 82, 133
BseDI CCNNGG 1 cut(s) 3
BseNI ACTGG 2 cut(s) 82, 133
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 99
BshFI GGCC 2 cut(s) 42, 123
BshTI ACCGGT 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 262
BsiSI CCGG 1 cut(s) 12
BsnI GGCC 2 cut(s) 42, 123
BsoBI CYCGRG 1 cut(s) 262
Bsp143I GATC 1 cut(s) 71
BspANI GGCC 2 cut(s) 42, 123
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 2 cut(s) 82, 133
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 3
BssMI GATC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 3
BstDEI CTNAG 1 cut(s) 275
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 3 cut(s) 87, 96, 192
BstNSI RCATGY 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 99
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 2 cut(s) 42, 123
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 50
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 2 cut(s) 108, 216
CviJI RGCY 8 cut(s) 42, 99, 123, 174, 186, 195, 261, 280
CviKI_1 RGCY 8 cut(s) 42, 99, 123, 174, 186, 195, 261, 280
DdeI CTNAG 1 cut(s) 275
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 3
ErhI CCWWGG 1 cut(s) 3
FaeI CATG 2 cut(s) 111, 219
FaiI YATR 6 cut(s) 85, 109, 114, 217, 221, 271
FatI CATG 2 cut(s) 107, 215
Fnu4HI GCNGC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 4 cut(s) 154, 187, 192, 249
GluI GCNGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 2 cut(s) 42, 123
HapII CCGG 1 cut(s) 12
Hin1II CATG 2 cut(s) 111, 219
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 48, 237
HpyCH4V TGCA 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 96, 192
HpyF3I CTNAG 1 cut(s) 275
Hsp92II CATG 2 cut(s) 111, 219
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 8 cut(s) 25, 33, 63, 77, 102, 114, 250, 262
Lsp1109I GCAGC 1 cut(s) 99
MaeI CTAG 4 cut(s) 154, 187, 192, 249
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MnlI CCTC 4 cut(s) 32, 63, 113, 244
MspI CCGG 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 87, 96, 192
NdeII GATC 1 cut(s) 71
NlaIII CATG 2 cut(s) 111, 219
NspI RCATGY 1 cut(s) 219
PciI ACATGT 1 cut(s) 215
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 1 cut(s) 89
PscI ACATGT 1 cut(s) 215
PsiI TTATAA 1 cut(s) 271
PspPI GGNCC 1 cut(s) 50
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 1 cut(s) 50
SetI ASST 2 cut(s) 55, 197
SinI GGWCC 1 cut(s) 50
SspMI CTAG 4 cut(s) 154, 187, 192, 249
StyI CCWWGG 1 cut(s) 3
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 50
XceI RCATGY 1 cut(s) 219
XspI CTAG 4 cut(s) 154, 187, 192, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.