Rmu_sc0012097.1_g000011

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012097.1
OG0000519
Physical Location & Seq
Reverse (-)
36739 .. 37790
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012097.1_g000011.1.cds

Sequence Viewer

Length: 582 bp
atgctgcaaatcggaggtagtgggttgggttgctgggtgcgcgggctgcaagtgcgtgctggtgttgcgttggctggaggttgggtgtgctggctgcagagcgggctgttcgcggcttgggctgctgagggcaggacccagggagtggcaggaggtatggcagtgagctgcagggaagccggctggagagcgggccttgatctcctgcactcacttcgaatgcaacacataattatggagagtgactgtatggaggctatagctgaagttcagtgtcgtgattatgcacttcttgctaatggggtaattgtagagagtgactgtatggaggctatagctaaagttcagtgtcgagatcatgcacttcttgctaatggggggctaattgatgacataaaatatgatgctgcacatattccttcttttcaggtacaacacacaccacgttcttgttatatggttgcgcataggctggcagctataggctatgaggcacttcatcatacgatcaggtttgatgttatgcctgaatgcatttctaatataatcaactttgaccacaggcacctccgttgctcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

193

Amino Acids

21.09

Weight (kDa)

6.17

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 564
AccB7I CCANNNNNTGG 1 cut(s) 145
AccBSI CCGCTC 2 cut(s) 102, 191
AccII CGCG 2 cut(s) 42, 113
AciI CCGC 4 cut(s) 42, 102, 113, 191
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 145
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 4 cut(s) 168, 263, 338, 479
AluI AGCT 4 cut(s) 168, 263, 338, 479
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 7 cut(s) 4, 46, 94, 122, 168, 407, 476
AspLEI GCGC 2 cut(s) 42, 466
AspS9I GGNCC 2 cut(s) 135, 193
AsuII TTCGAA 1 cut(s) 217
AvaII GGWCC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 564
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 6 cut(s) 33, 81, 109, 155, 394, 488
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 1 cut(s) 140
BfmI CTRYAG 5 cut(s) 95, 169, 258, 333, 480
BisI GCNGC 8 cut(s) 5, 47, 95, 114, 123, 169, 408, 477
BlsI GCNGC 8 cut(s) 6, 48, 96, 115, 124, 170, 409, 478
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 135, 193
BmiI GGNNCC 2 cut(s) 137, 566
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 394
BpmI CTGGAG 2 cut(s) 96, 205
Bpu10I CCTNAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 138, 139
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse118I RCCGGY 1 cut(s) 179
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 138, 139
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 117
BseXI GCAGC 6 cut(s) 33, 81, 109, 155, 394, 488
BseYI CCCAGC 1 cut(s) 33
BsgI GTGCAG 2 cut(s) 191, 393
Bsh1236I CGCG 2 cut(s) 42, 113
BshFI GGCC 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 564
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 145
BsmI GAATGC 2 cut(s) 225, 536
BsnI GGCC 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 217
Bsp143I GATC 3 cut(s) 199, 355, 507
BspACI CCGC 4 cut(s) 42, 102, 113, 191
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 2 cut(s) 42, 113
BspLI GGNNCC 2 cut(s) 137, 566
BspMAI CTGCAG 2 cut(s) 99, 173
BspT104I TTCGAA 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 564
BsrBI CCGCTC 2 cut(s) 102, 191
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 138, 139
BssMI GATC 3 cut(s) 199, 355, 507
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 248, 323
BstAPI GCANNNNNTGC 2 cut(s) 293, 368
BstBI TTCGAA 1 cut(s) 217
BstC8I GCNNGC 7 cut(s) 44, 57, 92, 104, 181, 193, 474
BstDEI CTNAG 1 cut(s) 126
BstFNI CGCG 2 cut(s) 42, 113
BstHHI GCGC 2 cut(s) 42, 466
BstKTI GATC 3 cut(s) 202, 358, 510
BstMBI GATC 3 cut(s) 199, 355, 507
BstMWI GCNNNNNNNGC 9 cut(s) 39, 46, 52, 65, 103, 119, 122, 293, 368
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 5 cut(s) 95, 169, 258, 333, 480
BstUI CGCG 2 cut(s) 42, 113
BstV1I GCAGC 6 cut(s) 33, 81, 109, 155, 394, 488
BsuRI GGCC 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 3 cut(s) 168, 278, 353
Cac8I GCNNGC 7 cut(s) 44, 57, 92, 104, 181, 193, 474
CfoI GCGC 2 cut(s) 42, 466
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 135, 193
Csp6I GTAC 1 cut(s) 431
CviAII CATG 1 cut(s) 359
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 1 cut(s) 126
DpnI GATC 3 cut(s) 201, 357, 509
DpnII GATC 3 cut(s) 199, 355, 507
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 536
FaeI CATG 1 cut(s) 362
FatI CATG 1 cut(s) 358
FauI CCCGC 3 cut(s) 35, 95, 184
Fnu4HI GCNGC 8 cut(s) 5, 47, 95, 114, 123, 169, 408, 477
Fsp4HI GCNGC 8 cut(s) 5, 47, 95, 114, 123, 169, 408, 477
FspI TGCGCA 1 cut(s) 465
GlaI GCGC 2 cut(s) 41, 465
GluI GCNGC 8 cut(s) 5, 47, 95, 114, 123, 169, 408, 477
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 2 cut(s) 96, 205
HaeIII GGCC 1 cut(s) 195
HapII CCGG 1 cut(s) 180
HhaI GCGC 2 cut(s) 42, 466
Hin1II CATG 1 cut(s) 362
Hin6I GCGC 2 cut(s) 40, 464
HinP1I GCGC 2 cut(s) 40, 464
HpaII CCGG 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 2 cut(s) 278, 353
HpyAV CCTTC 1 cut(s) 429
HpyCH4III ACNGT 2 cut(s) 248, 323
HpyCH4IV ACGT 1 cut(s) 445
HpyF10VI GCNNNNNNNGC 9 cut(s) 39, 46, 52, 65, 103, 119, 122, 293, 368
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 445
Hsp92II CATG 1 cut(s) 362
HspAI GCGC 2 cut(s) 40, 464
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 199, 355, 507
Lsp1109I GCAGC 6 cut(s) 33, 81, 109, 155, 394, 488
LweI GCATC 1 cut(s) 394
MaeII ACGT 1 cut(s) 445
MaeIII GTNAC 2 cut(s) 242, 317
MalI GATC 3 cut(s) 201, 357, 509
MbiI CCGCTC 2 cut(s) 102, 191
MboI GATC 3 cut(s) 199, 355, 507
MluCI AATT 3 cut(s) 231, 306, 384
MnlI CCTC 8 cut(s) 8, 71, 121, 146, 247, 322, 484, 578
Mph1103I ATGCAT 1 cut(s) 536
MroNI GCCGGC 1 cut(s) 179
MseI TTAA 1 cut(s) 580
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 140
Mva1269I GAATGC 2 cut(s) 225, 536
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 2 cut(s) 42, 113
MwoI GCNNNNNNNGC 9 cut(s) 39, 46, 52, 65, 103, 119, 122, 293, 368
NaeI GCCGGC 1 cut(s) 181
NdeII GATC 3 cut(s) 199, 355, 507
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 2 cut(s) 137, 566
NmuCI GTSAC 2 cut(s) 242, 317
NsbI TGCGCA 1 cut(s) 465
NsiI ATGCAT 1 cut(s) 536
NspV TTCGAA 1 cut(s) 217
PasI CCCWGGG 1 cut(s) 139
PctI GAATGC 2 cut(s) 225, 536
PdiI GCCGGC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 8 cut(s) 6, 48, 96, 115, 124, 170, 409, 478
PpuMI RGGWCCY 1 cut(s) 135
Psp5II RGGWCCY 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 137, 566
PspPI GGNCC 2 cut(s) 135, 193
PspPPI RGGWCCY 1 cut(s) 135
PstI CTGCAG 2 cut(s) 99, 173
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 580
SatI GCNGC 8 cut(s) 5, 47, 95, 114, 123, 169, 408, 477
Sau3AI GATC 3 cut(s) 199, 355, 507
Sau96I GGNCC 2 cut(s) 135, 193
ScrFI CCNGG 1 cut(s) 140
SfaNI GCATC 2 cut(s) 387, 394
SfcI CTRYAG 5 cut(s) 95, 169, 258, 333, 480
SfuI TTCGAA 1 cut(s) 217
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 3 cut(s) 231, 306, 384
SsiI CCGC 4 cut(s) 42, 102, 113, 191
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 2 cut(s) 248, 323
TaiI ACGT 1 cut(s) 448
TaqI TCGA 2 cut(s) 217, 352
TasI AATT 3 cut(s) 231, 306, 384
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 580
Tru9I TTAA 1 cut(s) 580
TscAI CASTG 3 cut(s) 168, 278, 353
TseFI GTSAC 2 cut(s) 242, 317
TseI GCWGC 7 cut(s) 4, 46, 94, 122, 168, 407, 476
Tsp45I GTSAC 2 cut(s) 242, 317
TspDTI ATGAA 1 cut(s) 488
TspGWI ACGGA 1 cut(s) 560
TspRI CASTG 3 cut(s) 168, 278, 353
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.