Rmu_sc0001900.1_g000032

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001900.1
OG0000519
Physical Location & Seq
Forward (+)
167525 .. 170388
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001900.1_g000032.1.cds

Sequence Viewer

Length: 594 bp
atgatcatttggaccttgtggaagaataggaatgatatgttgtggaataatacaaaacagtctgctgaggctttagtacttagttggttatcttggctggaggaatttggaaaagcgcaacagtttcgagccgcatttgttgccctaattccagttattgctcctgcaagacaagtaaagatgtgcgctatcaaggaggacttgaagctggtagctgcaatgcaggttagcaatgtcatcatcgaaacagattgtctggaagcagtttctagtattactgccgtacaattcacttatgtcaatgaggaaggactaattaatgacattcgtcaagaactcacccacagaactgacattatagtgcagcatacttcacctgtcgccacatcgcccaaccaaaacatccatttccggccatcatctcaactcaccacagccaccaacgagttcagggcaagcagtttatcaccttcccaaaacctcgtcgctaacccaaagctggagaactccgtacgtgccttcgccggcgatctgggcttctgcaaagcgaggattaccacctccggccacgattgggtgaagccatcaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

197

Amino Acids

22.01

Weight (kDa)

6.9

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AciI CCGC 1 cut(s) 132
AcoI YGGCCR 2 cut(s) 413, 565
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 3 cut(s) 78, 285, 513
AfiI CCNNNNNNNGG 2 cut(s) 499, 574
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 3 cut(s) 208, 215, 499
AluI AGCT 3 cut(s) 208, 215, 499
AoxI GGCC 2 cut(s) 413, 565
ApeKI GCWGC 2 cut(s) 215, 364
ApoI RAATTY 1 cut(s) 104
AseI ATTAAT 1 cut(s) 318
AspLEI GCGC 2 cut(s) 118, 188
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 6 cut(s) 331, 366, 421, 459, 579, 589
AvaII GGWCC 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 202, 376
BccI CCATC 2 cut(s) 424, 592
BceAI ACGGC 1 cut(s) 266
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 3 cut(s) 132, 216, 365
BlsI GCNGC 3 cut(s) 133, 217, 366
BmcAI AGTACT 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BoxI GACNNNNGTC 1 cut(s) 327
BpmI CTGGAG 2 cut(s) 119, 521
Bpu10I CCTNAGC 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 515
Bsc4I CCNNNNNNNGG 2 cut(s) 499, 574
Bse118I RCCGGY 1 cut(s) 524
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 2 cut(s) 225, 238
BseGI GGATG 1 cut(s) 402
BseLI CCNNNNNNNGG 2 cut(s) 499, 574
BseMI GCAATG 2 cut(s) 225, 238
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 202, 376
BsgI GTGCAG 1 cut(s) 383
BshFI GGCC 2 cut(s) 415, 567
BsiSI CCGG 3 cut(s) 412, 525, 564
BsiWI CGTACG 1 cut(s) 511
BslI CCNNNNNNNGG 2 cut(s) 499, 574
BsnI GGCC 2 cut(s) 415, 567
Bsp143I GATC 2 cut(s) 3, 529
BspACI CCGC 1 cut(s) 132
BspANI GGCC 2 cut(s) 415, 567
BspCNI CTCAG 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 214
BsrDI GCAATG 2 cut(s) 225, 238
BsrFI RCCGGY 1 cut(s) 524
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 524
BssMI GATC 2 cut(s) 3, 529
Bst4CI ACNGT 2 cut(s) 60, 123
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 515
BstC8I GCNNGC 2 cut(s) 457, 526
BstDEI CTNAG 2 cut(s) 66, 80
BstF5I GGATG 1 cut(s) 402
BstHHI GCGC 2 cut(s) 118, 188
BstKTI GATC 2 cut(s) 6, 532
BstMBI GATC 2 cut(s) 3, 529
BstMWI GCNNNNNNNGC 2 cut(s) 140, 534
BstPAI GACNNNNGTC 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 202, 376
BsuRI GGCC 2 cut(s) 415, 567
BtgZI GCGATG 1 cut(s) 372
BtsCI GGATG 1 cut(s) 402
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 457, 526
CfoI GCGC 2 cut(s) 118, 188
Cfr10I RCCGGY 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 3 cut(s) 77, 284, 512
CviQI GTAC 3 cut(s) 77, 284, 512
DdeI CTNAG 2 cut(s) 66, 80
DpnI GATC 2 cut(s) 5, 531
DpnII GATC 2 cut(s) 3, 529
EaeI YGGCCR 2 cut(s) 413, 565
Eco47I GGWCC 1 cut(s) 12
FaiI YATR 4 cut(s) 38, 297, 359, 369
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 132, 216, 365
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 3 cut(s) 132, 216, 365
FspBI CTAG 1 cut(s) 270
GlaI GCGC 2 cut(s) 117, 187
GluI GCNGC 3 cut(s) 132, 216, 365
GsuI CTGGAG 2 cut(s) 119, 521
HaeIII GGCC 2 cut(s) 415, 567
HapII CCGG 3 cut(s) 412, 525, 564
HhaI GCGC 2 cut(s) 118, 188
Hin6I GCGC 2 cut(s) 116, 186
HinP1I GCGC 2 cut(s) 116, 186
HpaII CCGG 3 cut(s) 412, 525, 564
HphI GGTGA 6 cut(s) 331, 366, 421, 459, 579, 589
Hpy188III TCNNGA 2 cut(s) 257, 332
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 3 cut(s) 302, 480, 529
HpyCH4III ACNGT 2 cut(s) 60, 123
HpyCH4IV ACGT 1 cut(s) 514
HpyCH4V TGCA 5 cut(s) 167, 218, 223, 364, 543
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 534
HpyF3I CTNAG 2 cut(s) 66, 80
HpySE526I ACGT 1 cut(s) 514
HspAI GCGC 2 cut(s) 116, 186
KroI GCCGGC 1 cut(s) 524
KroNI GCCGGC 1 cut(s) 526
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 529
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 2 cut(s) 202, 376
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 514
MalI GATC 2 cut(s) 5, 531
MboI GATC 2 cut(s) 3, 529
MboII GAAGA 1 cut(s) 34
MluCI AATT 4 cut(s) 104, 147, 287, 315
MnlI CCTC 7 cut(s) 61, 94, 190, 298, 491, 543, 571
MreI CGCCGGCG 1 cut(s) 524
MroNI GCCGGC 1 cut(s) 524
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 3 cut(s) 412, 525, 564
MwoI GCNNNNNNNGC 2 cut(s) 140, 534
NaeI GCCGGC 1 cut(s) 526
NdeII GATC 2 cut(s) 3, 529
NgoMIV GCCGGC 1 cut(s) 524
PdiI GCCGGC 1 cut(s) 526
Pfl23II CGTACG 1 cut(s) 511
PkrI GCNGC 3 cut(s) 133, 217, 366
Ppu21I YACGTR 1 cut(s) 515
PshAI GACNNNNGTC 1 cut(s) 327
PshBI ATTAAT 1 cut(s) 318
PspLI CGTACG 1 cut(s) 511
PspPI GGNCC 1 cut(s) 12
RsaI GTAC 3 cut(s) 78, 285, 513
RsaNI GTAC 3 cut(s) 77, 284, 512
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 3 cut(s) 132, 216, 365
Sau3AI GATC 2 cut(s) 3, 529
Sau96I GGNCC 1 cut(s) 12
ScaI AGTACT 1 cut(s) 78
SgrAI CRCCGGYG 1 cut(s) 524
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 359
Sse9I AATT 4 cut(s) 104, 147, 287, 315
SsiI CCGC 1 cut(s) 132
SspMI CTAG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 60, 123
TaiI ACGT 1 cut(s) 517
TaqI TCGA 2 cut(s) 127, 243
TasI AATT 4 cut(s) 104, 147, 287, 315
TatI WGTACW 1 cut(s) 76
TauI GCSGC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseI GCWGC 2 cut(s) 215, 364
TspGWI ACGGA 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 12
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 1 cut(s) 104
XspI CTAG 1 cut(s) 270
ZrmI AGTACT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.