FvH4_6g49051

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000519
Physical Location & Seq
Forward (+)
36841037 .. 36841586
550 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49051.t1

Sequence Viewer

Length: 279 bp
ATGTCGGTTGTAATGGAAACTGATTGCCTAGATGTTGTTATTGCAATTAATTCCAATCACCATGAAGGTTTGGCTGAAGCTGGAGTAGTAGATGACATCAATGAGGCCCTGAAAACTTTCTCTTCTCACTATTATGTTAAGTATGCTCCAAGAAATTGCAACGCTGTTGCTCATAGGTTGGATACAATAGCATATGAGGATCAAAATAGTGTAATATGGCTTTCCCAGCCTTCTGTTTGCTTCTATGATGCGCTGCAAGTTGATTGTAATGCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

93

Amino Acids

10.22

Weight (kDa)

4.42

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 60 8.6e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 96
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
AlwI GGATC 1 cut(s) 207
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 253
AseI ATTAAT 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 50
BbvI GCAGC 1 cut(s) 240
BciVI GTATCC 1 cut(s) 175
BfaI CTAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 106
BmsI GCATC 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 240
BseYI CCCAGC 1 cut(s) 225
BshFI GGCC 1 cut(s) 107
BsnI GGCC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 199
BspANI GGCC 1 cut(s) 107
BspPI GGATC 1 cut(s) 207
BssMI GATC 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 127
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 240
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 107
CfoI GCGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 1 cut(s) 62
CviJI RGCY 5 cut(s) 74, 80, 107, 220, 229
CviKI_1 RGCY 5 cut(s) 74, 80, 107, 220, 229
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 106
FaeI CATG 1 cut(s) 65
FaiI YATR 8 cut(s) 63, 135, 144, 174, 193, 195, 217, 246
FatI CATG 1 cut(s) 61
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 254
GsaI CCCAGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 107
HhaI GCGC 1 cut(s) 253
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HphI GGTGA 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 59, 240
HpyCH4V TGCA 3 cut(s) 44, 159, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 3 cut(s) 66, 122, 239
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 29
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 1 cut(s) 114
MluCI AATT 3 cut(s) 45, 49, 154
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 2 cut(s) 97, 190
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 2 cut(s) 48, 138
MslI CAYNNNNRTG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 199
NlaIII CATG 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 255
PshBI ATTAAT 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 2 cut(s) 48, 138
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 106
SetI ASST 4 cut(s) 70, 82, 179, 278
SfaNI GCATC 1 cut(s) 238
SgeI CNNG 7 cut(s) 41, 74, 93, 121, 162, 238, 269
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 3 cut(s) 45, 49, 154
SspMI CTAG 1 cut(s) 29
TasI AATT 3 cut(s) 45, 49, 154
Tru1I TTAA 2 cut(s) 48, 138
Tru9I TTAA 2 cut(s) 48, 138
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 78
VspI ATTAAT 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.