Rmu_co8368635.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8368635.1
OG0000519
Physical Location & Seq
Forward (+)
1 .. 889
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8368635.1_g000001.1.cds

Sequence Viewer

Length: 288 bp
gctcaaattgagaatgttaagatcgagactgactgtcttcaagctgctttagatatcaaagctgcaaaccatgaaagactggttgagggaggcttaatagatgacatcaaggtgctcctacagtccatgccatcggtttcaattagtcatgctcctagaacttataatgttgtggctcatcgcctagcaaacattgcctatgaggcaagcagtagttcgttttggtttgatcaagcacctgaatgtattatggatgtgcttaactttgattgtaaccctccccattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

95

Amino Acids

10.51

Weight (kDa)

4.75

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AgsI TTSAA 2 cut(s) 41, 141
AhdI GACNNNNNGTC 1 cut(s) 33
AluBI AGCT 2 cut(s) 44, 62
AluI AGCT 2 cut(s) 44, 62
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 44, 62
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 31, 49
BccI CCATC 1 cut(s) 139
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 2 cut(s) 156, 185
BfmI CTRYAG 1 cut(s) 119
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 2 cut(s) 45, 63
BlsI GCNGC 2 cut(s) 46, 64
BmeRI GACNNNNNGTC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 192
BseGI GGATG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 31, 49
BsiHKAI GWGCWC 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 21, 229
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 84
BssMI GATC 2 cut(s) 21, 229
Bst4CI ACNGT 2 cut(s) 35, 123
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 208
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 24, 232
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 2 cut(s) 21, 229
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstSFI CTRYAG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 31, 49
BstV2I GAAGAC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 208
CviAII CATG 3 cut(s) 71, 127, 149
CviJI RGCY 4 cut(s) 44, 62, 93, 176
CviKI_1 RGCY 4 cut(s) 44, 62, 93, 176
DpnI GATC 2 cut(s) 23, 231
DpnII GATC 2 cut(s) 21, 229
DriI GACNNNNNGTC 1 cut(s) 33
Eam1105I GACNNNNNGTC 1 cut(s) 33
Eco32I GATATC 1 cut(s) 55
EcoRV GATATC 1 cut(s) 55
FaeI CATG 3 cut(s) 74, 130, 152
FaiI YATR 6 cut(s) 72, 128, 150, 165, 201, 251
FatI CATG 3 cut(s) 70, 126, 148
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 45, 63
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 2 cut(s) 45, 63
FspBI CTAG 2 cut(s) 156, 185
GluI GCNGC 2 cut(s) 45, 63
Hin1II CATG 3 cut(s) 74, 130, 152
Hpy188III TCNNGA 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 35, 123
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
Hsp92II CATG 3 cut(s) 74, 130, 152
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 2 cut(s) 21, 229
LmnI GCTCC 2 cut(s) 120, 157
LpnPI CCDG 2 cut(s) 65, 252
Lsp1109I GCAGC 2 cut(s) 31, 49
MaeI CTAG 2 cut(s) 156, 185
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 23, 231
MboI GATC 2 cut(s) 21, 229
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 2 cut(s) 6, 141
MnlI CCTC 4 cut(s) 79, 83, 196, 288
MseI TTAA 3 cut(s) 18, 95, 261
MslI CAYNNNNRTG 2 cut(s) 110, 241
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NdeII GATC 2 cut(s) 21, 229
NlaIII CATG 3 cut(s) 74, 130, 152
PkrI GCNGC 2 cut(s) 46, 64
PsiI TTATAA 1 cut(s) 165
RseI CAYNNNNRTG 2 cut(s) 110, 241
SaqAI TTAA 3 cut(s) 18, 95, 261
SatI GCNGC 2 cut(s) 45, 63
Sau3AI GATC 2 cut(s) 21, 229
SduI GDGCHC 1 cut(s) 117
SetI ASST 4 cut(s) 46, 64, 114, 241
SfcI CTRYAG 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 110, 241
Sse9I AATT 2 cut(s) 6, 141
SspMI CTAG 2 cut(s) 156, 185
TaaI ACNGT 2 cut(s) 35, 123
TaqI TCGA 1 cut(s) 24
TasI AATT 2 cut(s) 6, 141
Tru1I TTAA 3 cut(s) 18, 95, 261
Tru9I TTAA 3 cut(s) 18, 95, 261
TseI GCWGC 2 cut(s) 44, 62
TspDTI ATGAA 1 cut(s) 87
XspI CTAG 2 cut(s) 156, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.