Rmu_co8370105.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8370105.1
OG0000519
Physical Location & Seq
Reverse (-)
359 .. 691
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8370105.1_g000001.1.cds

Sequence Viewer

Length: 333 bp
atggaggctatagctgaagttcagtgtcgtgattatgcacttcttgctaatggggtaattgtagagagtgactgtatggaggctatagctaaagttcagtgtcgagatcatgcacttcttgctaatggggggctaattgatgacataaaatatgatgctgcacatattccttcttttcaggtacaacacacaccacgttcttgttatatggttgcgcataggctggcagctataggctatgaggcacttcatcatacgatcaggtttgatgttatgcctgaatgcatttctaatataatcaactttgaccacaggcacctccgttgctcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

110

Amino Acids

12.36

Weight (kDa)

5.83

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 183
AluBI AGCT 3 cut(s) 14, 89, 230
AluI AGCT 3 cut(s) 14, 89, 230
ApeKI GCWGC 2 cut(s) 158, 227
AspLEI GCGC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 145, 239
BfmI CTRYAG 3 cut(s) 9, 84, 231
BisI GCNGC 2 cut(s) 159, 228
BlsI GCNGC 2 cut(s) 160, 229
BmiI GGNNCC 1 cut(s) 317
BmsI GCATC 1 cut(s) 145
BseXI GCAGC 2 cut(s) 145, 239
BsgI GTGCAG 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 315
BsmI GAATGC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 106, 258
BspLI GGNNCC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 315
BssMI GATC 2 cut(s) 106, 258
Bst4CI ACNGT 1 cut(s) 74
BstAPI GCANNNNNTGC 2 cut(s) 44, 119
BstC8I GCNNGC 1 cut(s) 225
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 109, 261
BstMBI GATC 2 cut(s) 106, 258
BstMWI GCNNNNNNNGC 2 cut(s) 44, 119
BstSFI CTRYAG 3 cut(s) 9, 84, 231
BstV1I GCAGC 2 cut(s) 145, 239
BtsIMutI CAGTG 2 cut(s) 29, 104
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 182
CviAII CATG 1 cut(s) 110
CviJI RGCY 8 cut(s) 8, 14, 83, 89, 133, 223, 230, 237
CviKI_1 RGCY 8 cut(s) 8, 14, 83, 89, 133, 223, 230, 237
CviQI GTAC 1 cut(s) 182
DpnI GATC 2 cut(s) 108, 260
DpnII GATC 2 cut(s) 106, 258
Eco57I CTGAAG 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 1 cut(s) 113
FatI CATG 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 159, 228
Fsp4HI GCNGC 2 cut(s) 159, 228
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 159, 228
HhaI GCGC 1 cut(s) 217
Hin1II CATG 1 cut(s) 113
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
Hpy188III TCNNGA 2 cut(s) 29, 104
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 4 cut(s) 38, 113, 161, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 119
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 1 cut(s) 113
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 106, 258
LpnPI CCDG 5 cut(s) 164, 209, 247, 291, 298
Lsp1109I GCAGC 2 cut(s) 145, 239
LweI GCATC 1 cut(s) 145
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 68
MalI GATC 2 cut(s) 108, 260
MboI GATC 2 cut(s) 106, 258
MluCI AATT 2 cut(s) 57, 135
MnlI CCTC 3 cut(s) 73, 235, 329
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 1 cut(s) 331
Mva1269I GAATGC 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 44, 119
NdeII GATC 2 cut(s) 106, 258
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 68
NsbI TGCGCA 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 287
PctI GAATGC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 160, 229
PspN4I GGNNCC 1 cut(s) 317
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 2 cut(s) 159, 228
Sau3AI GATC 2 cut(s) 106, 258
SetI ASST 7 cut(s) 16, 91, 183, 199, 232, 266, 321
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 3 cut(s) 9, 84, 231
Sse9I AATT 2 cut(s) 57, 135
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 103
TasI AATT 2 cut(s) 57, 135
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 2 cut(s) 29, 104
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 2 cut(s) 158, 227
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 239
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 2 cut(s) 29, 104
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.