Rroxscaffold_1G00027660

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000519
Physical Location & Seq
Reverse (-)
35092751 .. 35100381
7631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00027660.1

Sequence Viewer

Length: 357 bp
ATGGTACCTGAGGTGTTGCTACTTGGACAGTTTGATACCCGATGTATTAAAGGGGACAGTTTGGTACTTGAAATAGGGGTGGCTGCGGAGGATCAGTTGACCGCGCTGACCTTGGCTTTTATGTTCCAGTTACTTGATGCTTCTAGTTCTATACAGCTTCAAAATCTTAGCAAAGATTATGCTTTTGATGAGAATGGAGTAGTACTAGATGACATTGAAGCTCTGATGCTTGGTATTAGGGGAGCTCAGGTTCATCATGCCCCAAGAACTTGCAACATTGCACACCGACTCGCGGCCATGGCTTTTGAGGCTAACCAGCATGAAACAGTTTCATGTGGTCCCAATTTGTATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

118

Amino Acids

12.83

Weight (kDa)

4.55

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 2 cut(s) 104, 293
AciI CCGC 3 cut(s) 86, 102, 293
AclWI GGATC 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 294
AfaI GTAC 3 cut(s) 6, 66, 204
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 3 cut(s) 71, 161, 218
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 3 cut(s) 157, 221, 245
AluI AGCT 3 cut(s) 157, 221, 245
Alw21I GWGCWC 1 cut(s) 247
AlwI GGATC 1 cut(s) 99
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 83
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 338
AvaII GGWCC 1 cut(s) 338
AxyI CCTNAGG 1 cut(s) 9
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 70
BfaI CTAG 2 cut(s) 144, 206
BisI GCNGC 2 cut(s) 84, 294
BlsI GCNGC 2 cut(s) 85, 295
BmcAI AGTACT 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 2 cut(s) 6, 340
BmsI GCATC 2 cut(s) 127, 216
Bpu10I CCTNAGC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 111, 297
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 234, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 127
Bse21I CCTNAGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 111, 297
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 2 cut(s) 104, 293
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 247
BslFI GGGAC 2 cut(s) 68, 324
BslI CCNNNNNNNGG 1 cut(s) 292
BsmFI GGGAC 2 cut(s) 68, 324
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 1 cut(s) 91
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 3 cut(s) 86, 102, 293
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 2 cut(s) 104, 293
BspHI TCATGA 1 cut(s) 353
BspLI GGNNCC 2 cut(s) 6, 340
BspPI GGATC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 111, 297
BssMI GATC 1 cut(s) 91
BssT1I CCWWGG 2 cut(s) 111, 297
Bst4CI ACNGT 3 cut(s) 30, 59, 328
BstDEI CTNAG 3 cut(s) 9, 167, 246
BstDSI CCRYGG 1 cut(s) 297
BstFNI CGCG 2 cut(s) 104, 293
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 299, 308
BstUI CGCG 2 cut(s) 104, 293
BstV1I GCAGC 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 9
BsuRI GGCC 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 297
CciI TCATGA 1 cut(s) 353
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 338
Csp6I GTAC 3 cut(s) 5, 65, 203
CviAII CATG 5 cut(s) 257, 298, 320, 333, 354
CviJI RGCY 8 cut(s) 83, 116, 157, 221, 245, 296, 302, 311
CviKI_1 RGCY 8 cut(s) 83, 116, 157, 221, 245, 296, 302, 311
CviQI GTAC 3 cut(s) 5, 65, 203
DdeI CTNAG 3 cut(s) 9, 167, 246
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 245
Eco130I CCWWGG 2 cut(s) 111, 297
Eco24I GRGCYC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 338
Eco53kI GAGCTC 1 cut(s) 245
Eco81I CCTNAGG 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 245
EcoT14I CCWWGG 2 cut(s) 111, 297
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 2 cut(s) 111, 297
FaeI CATG 5 cut(s) 260, 301, 323, 336, 357
FaiI YATR 8 cut(s) 122, 152, 180, 258, 299, 321, 334, 355
FaqI GGGAC 2 cut(s) 68, 324
FatI CATG 5 cut(s) 256, 297, 319, 332, 353
Fnu4HI GCNGC 2 cut(s) 84, 294
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 2 cut(s) 84, 294
FspBI CTAG 2 cut(s) 144, 206
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 84, 294
HaeIII GGCC 1 cut(s) 296
HhaI GCGC 1 cut(s) 106
Hin1II CATG 5 cut(s) 260, 301, 323, 336, 357
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 1 cut(s) 288
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 354
Hpy8I GTNNAC 1 cut(s) 99
HpyCH4III ACNGT 3 cut(s) 30, 59, 328
HpyCH4V TGCA 2 cut(s) 273, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 308
HpyF3I CTNAG 3 cut(s) 9, 167, 246
Hsp92II CATG 5 cut(s) 260, 301, 323, 336, 357
HspAI GCGC 1 cut(s) 104
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 4 cut(s) 21, 140, 233, 329
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 127, 216
MaeI CTAG 2 cut(s) 144, 206
MaeIII GTNAC 1 cut(s) 129
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 343
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 3 cut(s) 4, 82, 301
MseI TTAA 1 cut(s) 48
MvnI CGCG 2 cut(s) 104, 293
MwoI GCNNNNNNNGC 2 cut(s) 299, 308
NcoI CCATGG 1 cut(s) 297
NdeII GATC 1 cut(s) 91
NlaIII CATG 5 cut(s) 260, 301, 323, 336, 357
NlaIV GGNNCC 2 cut(s) 6, 340
PagI TCATGA 1 cut(s) 353
PkrI GCNGC 2 cut(s) 85, 295
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 6, 340
PspPI GGNCC 1 cut(s) 338
RsaI GTAC 3 cut(s) 6, 66, 204
RsaNI GTAC 3 cut(s) 5, 65, 203
SacI GAGCTC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 2 cut(s) 84, 294
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 338
ScaI AGTACT 1 cut(s) 204
SchI GAGTC 1 cut(s) 282
SduI GDGCHC 1 cut(s) 247
SetI ASST 7 cut(s) 10, 15, 113, 159, 223, 247, 252
SfaNI GCATC 2 cut(s) 127, 216
SinI GGWCC 1 cut(s) 338
Sse9I AATT 1 cut(s) 343
SsiI CCGC 3 cut(s) 86, 102, 293
SspMI CTAG 2 cut(s) 144, 206
SstI GAGCTC 1 cut(s) 247
StyI CCWWGG 2 cut(s) 111, 297
TaaI ACNGT 3 cut(s) 30, 59, 328
TasI AATT 1 cut(s) 343
TatI WGTACW 1 cut(s) 202
TauI GCSGC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 4 cut(s) 242, 321, 336, 342
VpaK11BI GGWCC 1 cut(s) 338
XspI CTAG 2 cut(s) 144, 206
ZrmI AGTACT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.