Rmu_sc0004206.1_g000011

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004206.1
OG0000519
Physical Location & Seq
Forward (+)
36307 .. 39068
2762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004206.1_g000011.1.cds

Sequence Viewer

Length: 816 bp
atgtggctcaaagatggagatcgtaattcagctttctttcatagaaaggccactaatagacgtattaggaatgctattaagggcttgaaggataatcaagttgttgcagttttggttaatggtgaggtgacgcagaaaattcttccaacaagaggcattaggcaggttgagctcctatcttcccctcttcttaatctcctgcagcccttgctaccttctataaacttcaaagaatggctattggattgtgcactgaatctgaatcttgctacctttgaaaagttgatgatggtcttatggtttgtgtggaagaatccaaacagtaaactctgggatggtgtggctcaaacagcacctaatattcttctatactccatggcttggttggaagagttccacaaagctcatgatgtgcacaataacatgggtagtagaagtatcaagcagccttggaaacgggtaactgaggtccaagttaagttgaatgtggatggatctttcattccaggcatgcaaagaggaggtacatgcggtgtcattcgagctgagcgagaaagtgactgtttggaagcagtacaattgatcactcgtgaggaccatgactgtgacgagcaaagagctgtgttggctgacattgttgtccttatgactgcacttccaggtgtagagattaagcatgcctctggtacttgtaacaatgtggcacatagattagctattattgcttttgaatcaaaccagtgtgaggtctggtttcatgtaccgccaaactctattactgatgtactccagtataacctagctcatgctacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

271

Amino Acids

30.67

Weight (kDa)

7.69

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 638
Acc36I ACCTGC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 381
AciI CCGC 2 cut(s) 531, 764
AclWI GGATC 1 cut(s) 502
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 5 cut(s) 526, 576, 688, 762, 786
AfiI CCNNNNNNNGG 3 cut(s) 152, 381, 745
AgsI TTSAA 5 cut(s) 88, 229, 278, 484, 731
AjnI CCWGG 2 cut(s) 505, 658
AluBI AGCT 7 cut(s) 32, 172, 404, 545, 620, 716, 803
AluI AGCT 7 cut(s) 32, 172, 404, 545, 620, 716, 803
Alw21I GWGCWC 3 cut(s) 174, 253, 417
Alw44I GTGCAC 2 cut(s) 249, 413
AlwI GGATC 1 cut(s) 502
AoxI GGCC 1 cut(s) 48
ApaLI GTGCAC 2 cut(s) 249, 413
ApeKI GCWGC 2 cut(s) 202, 445
ApoI RAATTY 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 469, 595
AsuHPI GGTGA 2 cut(s) 134, 139
AvaII GGWCC 2 cut(s) 469, 595
BaeGI GKGCMC 2 cut(s) 253, 417
BanII GRGCYC 1 cut(s) 174
BauI CACGAG 1 cut(s) 588
Bbv12I GWGCWC 3 cut(s) 174, 253, 417
BbvI GCAGC 2 cut(s) 214, 457
BccI CCATC 4 cut(s) 8, 283, 329, 485
BciT130I CCWGG 2 cut(s) 507, 660
BclI TGATCA 1 cut(s) 582
BfaI CTAG 1 cut(s) 800
BfmI CTRYAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 154
BisI GCNGC 2 cut(s) 203, 446
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 2 cut(s) 204, 447
Bme1390I CCNGG 2 cut(s) 507, 660
Bme18I GGWCC 2 cut(s) 469, 595
BmgT120I GGNCC 2 cut(s) 469, 595
BmrFI CCNGG 2 cut(s) 507, 660
BpmI CTGGAG 1 cut(s) 773
Bpu1102I GCTNAGC 1 cut(s) 546
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 375, 449
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 381, 745
Bse1I ACTGG 2 cut(s) 739, 790
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 2 cut(s) 507, 660
BseDI CCNNGG 2 cut(s) 375, 449
BseGI GGATG 2 cut(s) 340, 496
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 3 cut(s) 152, 381, 745
BseMII CTCAG 2 cut(s) 456, 537
BseNI ACTGG 2 cut(s) 739, 790
BseRI GAGGAG 1 cut(s) 534
BseSI GKGCMC 2 cut(s) 253, 417
BseXI GCAGC 2 cut(s) 214, 457
BsgI GTGCAG 1 cut(s) 636
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 3 cut(s) 174, 253, 417
BslI CCNNNNNNNGG 3 cut(s) 152, 381, 745
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 3 cut(s) 174, 253, 417
Bsp143I GATC 3 cut(s) 19, 494, 582
Bsp1720I GCTNAGC 1 cut(s) 546
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 2 cut(s) 531, 764
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 457, 538
BspHI TCATGA 1 cut(s) 406
BspMAI CTGCAG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 154
BspPI GGATC 1 cut(s) 502
BsrI ACTGG 2 cut(s) 739, 790
BssECI CCNNGG 2 cut(s) 375, 449
BssMI GATC 3 cut(s) 19, 494, 582
BssSI CACGAG 1 cut(s) 588
BssT1I CCWWGG 2 cut(s) 375, 449
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 2 cut(s) 507, 660
Bst4CI ACNGT 3 cut(s) 323, 563, 605
Bst6I CTCTTC 2 cut(s) 192, 384
BstAPI GCANNNNNTGC 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 512, 678
BstDEI CTNAG 2 cut(s) 465, 546
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 340, 496
BstKTI GATC 3 cut(s) 22, 497, 585
BstMBI GATC 3 cut(s) 19, 494, 582
BstMWI GCNNNNNNNGC 5 cut(s) 169, 208, 350, 626, 722
BstNI CCWGG 2 cut(s) 507, 660
BstNSI RCATGY 3 cut(s) 514, 531, 680
BstSCI CCNGG 2 cut(s) 505, 658
BstSFI CTRYAG 1 cut(s) 200
BstSLI GKGCMC 2 cut(s) 253, 417
BstV1I GCAGC 2 cut(s) 214, 457
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 2 cut(s) 340, 496
BtsIMutI CAGTG 2 cut(s) 251, 746
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 512, 678
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 2 cut(s) 469, 595
CseI GACGC 1 cut(s) 139
Csp6I GTAC 5 cut(s) 525, 575, 687, 761, 785
CviAII CATG 9 cut(s) 376, 407, 424, 511, 528, 599, 677, 758, 806
CviQI GTAC 5 cut(s) 525, 575, 687, 761, 785
DdeI CTNAG 2 cut(s) 465, 546
DpnI GATC 3 cut(s) 21, 496, 584
DpnII GATC 3 cut(s) 19, 494, 582
DrdI GACNNNNNNGTC 1 cut(s) 638
DseDI GACNNNNNNGTC 1 cut(s) 638
Eam1104I CTCTTC 2 cut(s) 192, 384
EarI CTCTTC 2 cut(s) 192, 384
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 375, 449
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 469, 595
Eco53kI GAGCTC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 505, 658
EcoT14I CCWWGG 2 cut(s) 375, 449
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 2 cut(s) 375, 449
FaeI CATG 9 cut(s) 379, 410, 427, 514, 531, 602, 680, 761, 809
FatI CATG 9 cut(s) 375, 406, 423, 510, 527, 598, 676, 757, 805
FbaI TGATCA 1 cut(s) 582
Fnu4HI GCNGC 2 cut(s) 203, 446
FokI GGATG 2 cut(s) 347, 503
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 2 cut(s) 203, 446
FspBI CTAG 1 cut(s) 800
GluI GCNGC 2 cut(s) 203, 446
GsuI CTGGAG 1 cut(s) 773
HaeIII GGCC 1 cut(s) 50
HgaI GACGC 1 cut(s) 139
Hin1II CATG 9 cut(s) 379, 410, 427, 514, 531, 602, 680, 761, 809
HinfI GANTC 4 cut(s) 256, 262, 313, 731
HphI GGTGA 2 cut(s) 134, 139
Hpy166II GTNNAC 3 cut(s) 251, 326, 415
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 2 cut(s) 407, 590
Hpy8I GTNNAC 3 cut(s) 251, 326, 415
HpyAV CCTTC 2 cut(s) 82, 225
HpyCH4III ACNGT 3 cut(s) 323, 563, 605
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 6 cut(s) 107, 202, 251, 415, 514, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 169, 208, 350, 626, 722
HpyF3I CTNAG 2 cut(s) 465, 546
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 9 cut(s) 379, 410, 427, 514, 531, 602, 680, 761, 809
Ksp22I TGATCA 1 cut(s) 582
Kzo9I GATC 3 cut(s) 19, 494, 582
LmnI GCTCC 1 cut(s) 177
Lsp1109I GCAGC 2 cut(s) 214, 457
MaeI CTAG 1 cut(s) 800
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 5 cut(s) 127, 460, 557, 605, 692
MalI GATC 3 cut(s) 21, 496, 584
MboI GATC 3 cut(s) 19, 494, 582
MboII GAAGA 6 cut(s) 134, 171, 179, 322, 356, 401
MfeI CAATTG 1 cut(s) 578
MflI RGATCY 1 cut(s) 494
MhlI GDGCHC 3 cut(s) 174, 253, 417
MluCI AATT 3 cut(s) 25, 138, 578
MmeI TCCRAC 2 cut(s) 170, 366
MnlI CCTC 9 cut(s) 118, 146, 195, 460, 512, 515, 586, 691, 739
MseI TTAA 6 cut(s) 78, 117, 192, 477, 672, 814
MslI CAYNNNNRTG 1 cut(s) 603
MspR9I CCNGG 2 cut(s) 507, 660
MunI CAATTG 1 cut(s) 578
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 2 cut(s) 507, 660
MwoI GCNNNNNNNGC 5 cut(s) 169, 208, 350, 626, 722
NcoI CCATGG 1 cut(s) 375
NdeII GATC 3 cut(s) 19, 494, 582
NlaIII CATG 9 cut(s) 379, 410, 427, 514, 531, 602, 680, 761, 809
NmuCI GTSAC 3 cut(s) 127, 557, 605
NspI RCATGY 3 cut(s) 514, 531, 680
PaeI GCATGC 2 cut(s) 514, 680
PagI TCATGA 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 4 cut(s) 256, 262, 313, 731
PflMI CCANNNNNTGG 1 cut(s) 381
PkrI GCNGC 2 cut(s) 204, 447
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 505, 658
PspGI CCWGG 2 cut(s) 505, 658
PspPI GGNCC 2 cut(s) 469, 595
PstI CTGCAG 1 cut(s) 204
PsuI RGATCY 1 cut(s) 494
RsaI GTAC 5 cut(s) 526, 576, 688, 762, 786
RsaNI GTAC 5 cut(s) 525, 575, 687, 761, 785
RseI CAYNNNNRTG 1 cut(s) 603
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 6 cut(s) 78, 117, 192, 477, 672, 814
SatI GCNGC 2 cut(s) 203, 446
Sau3AI GATC 3 cut(s) 19, 494, 582
Sau96I GGNCC 2 cut(s) 469, 595
ScrFI CCNGG 2 cut(s) 507, 660
SduI GDGCHC 3 cut(s) 174, 253, 417
SfcI CTRYAG 1 cut(s) 200
SinI GGWCC 2 cut(s) 469, 595
SmiMI CAYNNNNRTG 1 cut(s) 603
SphI GCATGC 2 cut(s) 514, 680
Sse9I AATT 3 cut(s) 25, 138, 578
SsiI CCGC 2 cut(s) 531, 764
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 800
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 505, 658
StyI CCWWGG 2 cut(s) 375, 449
TaaI ACNGT 3 cut(s) 323, 563, 605
TaiI ACGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 541
TasI AATT 3 cut(s) 25, 138, 578
TatI WGTACW 2 cut(s) 574, 784
TfiI GAWTC 4 cut(s) 256, 262, 313, 731
Tru1I TTAA 6 cut(s) 78, 117, 192, 477, 672, 814
Tru9I TTAA 6 cut(s) 78, 117, 192, 477, 672, 814
TscAI CASTG 2 cut(s) 258, 746
TseFI GTSAC 3 cut(s) 127, 557, 605
TseI GCWGC 2 cut(s) 202, 445
Tsp45I GTSAC 3 cut(s) 127, 557, 605
TspDTI ATGAA 3 cut(s) 29, 490, 746
TspRI CASTG 2 cut(s) 258, 746
Van91I CCANNNNNTGG 1 cut(s) 381
VneI GTGCAC 2 cut(s) 249, 413
VpaK11BI GGWCC 2 cut(s) 469, 595
XapI RAATTY 1 cut(s) 138
XceI RCATGY 3 cut(s) 514, 531, 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XspI CTAG 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.