Rmu_sc0007883.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007883.1
OG0000519
Physical Location & Seq
Forward (+)
81145 .. 81717
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007883.1_g000010.1.cds

Sequence Viewer

Length: 411 bp
atggcctggttggaagtgttccatcaggctagagaagtgcaccccagcaatggaggaagaaatgtcaaggaaagatggagactggcaattgatggccggtttaaaatgaatgtggatggagctttcattccaaatatgcatggaagagagagtgactatttggaggcaattcaactagtaactagcgaaaagcatgaccttgatgagcagggtgctgtattggatgacattgcagttcttatgaaggcgcttccgggtgtagaaattaagcatgctcctcatactttcagcaacgtggcacatagactagctgttattgcttttgaatcaaaccagcgtgaggtctggtttcatgtgccttcgaacactatatctgatgtactccagtatgtcctcactcatactgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

136

Amino Acids

15.44

Weight (kDa)

5.95

Isoelectric Point (pI)

31.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 94
AfaI GTAC 1 cut(s) 381
AfiI CCNNNNNNNGG 2 cut(s) 50, 340
AgsI TTSAA 2 cut(s) 173, 326
AhlI ACTAGT 1 cut(s) 175
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 2 cut(s) 122, 311
AluI AGCT 2 cut(s) 122, 311
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 73
Alw44I GTGCAC 1 cut(s) 38
AoxI GGCC 2 cut(s) 3, 94
ApaLI GTGCAC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 255
AsuII TTCGAA 1 cut(s) 362
BaeGI GKGCMC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 42
BccI CCATC 4 cut(s) 30, 69, 86, 110
BciT130I CCWGG 1 cut(s) 7
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 73
BcuI ACTAGT 1 cut(s) 175
BfaI CTAG 4 cut(s) 30, 176, 183, 308
BfoI RGCGCY 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 7, 255
BmrFI CCNGG 2 cut(s) 7, 255
BpmI CTGGAG 1 cut(s) 368
Bpu14I TTCGAA 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 340
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 2 cut(s) 87, 385
Bse3DI GCAATG 2 cut(s) 55, 228
BseBI CCWGG 1 cut(s) 7
BseGI GGATG 2 cut(s) 121, 229
BseLI CCNNNNNNNGG 2 cut(s) 50, 340
BseMI GCAATG 2 cut(s) 55, 228
BseNI ACTGG 2 cut(s) 87, 385
BseRI GAGGAG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 42
BseYI CCCAGC 1 cut(s) 44
BshFI GGCC 2 cut(s) 5, 96
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 2 cut(s) 97, 254
BslI CCNNNNNNNGG 2 cut(s) 50, 340
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 2 cut(s) 5, 96
Bsp119I TTCGAA 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 42
BspANI GGCC 2 cut(s) 5, 96
BspT104I TTCGAA 1 cut(s) 362
BsrDI GCAATG 2 cut(s) 55, 228
BsrFI RCCGGY 1 cut(s) 96
BsrI ACTGG 2 cut(s) 87, 385
BssAI RCCGGY 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 273
BstF5I GGATG 2 cut(s) 121, 229
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 7
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 5, 253
BstSLI GKGCMC 1 cut(s) 42
BsuRI GGCC 2 cut(s) 5, 96
BtsCI GGATG 2 cut(s) 121, 229
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 96
Csp6I GTAC 1 cut(s) 380
CviAII CATG 4 cut(s) 140, 194, 272, 353
CviJI RGCY 5 cut(s) 5, 29, 96, 122, 311
CviKI_1 RGCY 5 cut(s) 5, 29, 96, 122, 311
CviQI GTAC 1 cut(s) 380
DraI TTTAAA 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 5
EcoT22I ATGCAT 1 cut(s) 141
FaeI CATG 4 cut(s) 143, 197, 275, 356
FatI CATG 4 cut(s) 139, 193, 271, 352
FokI GGATG 2 cut(s) 128, 236
FspBI CTAG 4 cut(s) 30, 176, 183, 308
GlaI GCGC 1 cut(s) 249
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 2 cut(s) 5, 96
HapII CCGG 2 cut(s) 97, 254
HhaI GCGC 1 cut(s) 250
Hin1II CATG 4 cut(s) 143, 197, 275, 356
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 1 cut(s) 326
HpaII CCGG 2 cut(s) 97, 254
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 376
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 238, 369
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 3 cut(s) 40, 139, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 4 cut(s) 143, 197, 275, 356
HspAI GCGC 1 cut(s) 248
LmnI GCTCC 2 cut(s) 119, 280
MaeI CTAG 4 cut(s) 30, 176, 183, 308
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 152, 178
MboII GAAGA 2 cut(s) 69, 156
MfeI CAATTG 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 3 cut(s) 87, 168, 264
MnlI CCTC 5 cut(s) 47, 157, 288, 334, 404
Mph1103I ATGCAT 1 cut(s) 141
MseI TTAA 3 cut(s) 102, 267, 409
MspI CCGG 2 cut(s) 97, 254
MspR9I CCNGG 2 cut(s) 7, 255
MunI CAATTG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 317
NciI CCSGG 1 cut(s) 255
NlaIII CATG 4 cut(s) 143, 197, 275, 356
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 141
NspI RCATGY 1 cut(s) 275
NspV TTCGAA 1 cut(s) 362
PaeI GCATGC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 5
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 5
RsaI GTAC 1 cut(s) 381
RsaNI GTAC 1 cut(s) 380
SaqAI TTAA 3 cut(s) 102, 267, 409
ScrFI CCNGG 2 cut(s) 7, 255
SduI GDGCHC 1 cut(s) 42
SetI ASST 5 cut(s) 124, 201, 297, 313, 345
SfuI TTCGAA 1 cut(s) 362
SpeI ACTAGT 1 cut(s) 175
SphI GCATGC 1 cut(s) 275
Sse9I AATT 3 cut(s) 87, 168, 264
SspMI CTAG 4 cut(s) 30, 176, 183, 308
StyD4I CCNGG 2 cut(s) 5, 253
TaiI ACGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 362
TasI AATT 3 cut(s) 87, 168, 264
TatI WGTACW 1 cut(s) 379
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 3 cut(s) 102, 267, 409
Tru9I TTAA 3 cut(s) 102, 267, 409
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 4 cut(s) 115, 122, 257, 341
VneI GTGCAC 1 cut(s) 38
XceI RCATGY 1 cut(s) 275
XspI CTAG 4 cut(s) 30, 176, 183, 308
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.