Rorug02G0051000

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000519
Physical Location & Seq
Reverse (-)
3922109 .. 3923826
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0051000.1

Sequence Viewer

Length: 303 bp
ATGTGTCACCCGGCGGGTGTGTCTTCGGTTGGCCATAGAGACTTGGCGGTGCAAAATCGCCGGTGGCTGCTTCTTCTTCTGCAGGCGCGGGTAGATGGTGCAAGGAACTTGCAGGAACCTGCAGCTAGAGGAGTTAGAGTGGCTGCTGCTTCTGGTGGAGGTGACAGCGGTGGTGGCGGAGCAAGGCGGTGCGTCTGCTCGCCGACCAGGCATCCGGGGTCGTTCCGGTGCAGGCAACACCATGCTGATCTGTATGTCTGGGGTGGTCGAACTGTGACAAGAAACAGGTCCAGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

100

Amino Acids

10.7

Weight (kDa)

11.57

Isoelectric Point (pI)

63.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AccII CGCG 1 cut(s) 88
AciI CCGC 6 cut(s) 14, 47, 88, 168, 177, 187
AcoI YGGCCR 1 cut(s) 31
AfaI GTAC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 33
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 4 cut(s) 67, 122, 143, 146
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 2 cut(s) 11, 216
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 288
BalI TGGCCA 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 4 cut(s) 54, 130, 133, 134
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 208
BcnI CCSGG 2 cut(s) 11, 216
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 2 cut(s) 80, 120
BfuAI ACCTGC 1 cut(s) 127
BglI GCCNNNNNGGC 1 cut(s) 208
BisI GCNGC 4 cut(s) 68, 123, 144, 147
BlsI GCNGC 4 cut(s) 69, 124, 145, 148
BmcAI AGTACT 1 cut(s) 295
Bme1390I CCNGG 3 cut(s) 11, 208, 216
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 3 cut(s) 11, 208, 216
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 15
BpuMI CCSGG 2 cut(s) 11, 216
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 4 cut(s) 54, 130, 133, 134
BsgI GTGCAG 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 33
BsiSI CCGG 4 cut(s) 11, 61, 215, 226
BsmAI GTCTC 1 cut(s) 33
BsnI GGCC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 6 cut(s) 14, 47, 88, 168, 177, 187
BspANI GGCC 1 cut(s) 33
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 2 cut(s) 84, 124
BspMI ACCTGC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 274
BstC8I GCNNGC 3 cut(s) 84, 200, 233
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 174, 208
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 9, 206, 214
BstSFI CTRYAG 2 cut(s) 80, 120
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 4 cut(s) 54, 130, 133, 134
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 211
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 84, 200, 233
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 288
CseI GACGC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 294
CviAII CATG 1 cut(s) 242
CviJI RGCY 4 cut(s) 33, 67, 125, 143
CviKI_1 RGCY 4 cut(s) 33, 67, 125, 143
CviQI GTAC 1 cut(s) 294
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 31
EciI GGCGGA 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 206
FaeI CATG 1 cut(s) 245
FaiI YATR 3 cut(s) 36, 243, 255
FatI CATG 1 cut(s) 241
FauI CCCGC 2 cut(s) 7, 81
Fnu4HI GCNGC 4 cut(s) 68, 123, 144, 147
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 4 cut(s) 68, 123, 144, 147
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 87
GluI GCNGC 4 cut(s) 68, 123, 144, 147
HaeIII GGCC 1 cut(s) 33
HapII CCGG 4 cut(s) 11, 61, 215, 226
HgaI GACGC 1 cut(s) 181
HhaI GCGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 245
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HpaII CCGG 4 cut(s) 11, 61, 215, 226
HphI GGTGA 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 6 cut(s) 52, 82, 101, 112, 122, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 208
Hsp92II CATG 1 cut(s) 245
HspAI GCGC 1 cut(s) 86
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 4 cut(s) 54, 130, 133, 134
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 5, 161, 274
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 3 cut(s) 15, 65, 68
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 1 cut(s) 298
MluNI TGGCCA 1 cut(s) 33
MnlI CCTC 2 cut(s) 122, 152
Mox20I TGGCCA 1 cut(s) 33
MscI TGGCCA 1 cut(s) 33
MseI TTAA 1 cut(s) 301
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 4 cut(s) 11, 61, 215, 226
MspR9I CCNGG 3 cut(s) 11, 208, 216
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 174, 208
NciI CCSGG 2 cut(s) 11, 216
NdeII GATC 1 cut(s) 247
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 3 cut(s) 5, 161, 274
PkrI GCNGC 4 cut(s) 69, 124, 145, 148
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 288
PstI CTGCAG 2 cut(s) 84, 124
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 301
SatI GCNGC 4 cut(s) 68, 123, 144, 147
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 288
ScaI AGTACT 1 cut(s) 295
ScrFI CCNGG 3 cut(s) 11, 208, 216
SetI ASST 4 cut(s) 121, 127, 163, 290
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 2 cut(s) 80, 120
SgrAI CRCCGGYG 1 cut(s) 60
SinI GGWCC 1 cut(s) 288
Sse9I AATT 1 cut(s) 298
SsiI CCGC 6 cut(s) 14, 47, 88, 168, 177, 187
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 9, 206, 214
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 268
TasI AATT 1 cut(s) 298
TatI WGTACW 1 cut(s) 293
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TseFI GTSAC 3 cut(s) 5, 161, 274
TseI GCWGC 4 cut(s) 67, 122, 143, 146
Tsp45I GTSAC 3 cut(s) 5, 161, 274
VpaK11BI GGWCC 1 cut(s) 288
XspI CTAG 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.