Rmu_sc0008270.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008270.1
OG0000519
Physical Location & Seq
Forward (+)
12470 .. 13029
560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008270.1_g000003.1.cds

Sequence Viewer

Length: 483 bp
atgtttgctgctttatcatggcatgatgaattctgcaaggcaaggcaacttgtgcttgtagctacagccatttatggaggagcactcagggatactcaaggcaacttcaaggctgccttcatttgtccagttcagtatgtgcagcatgccaaacaggtagaacttctcgctaataaggaggggttgaaactactatctacttatcctgggcaatctgcaatagttgagacagattgtctcaaagctacaatggacattcaaaaccccatatatgatcttttaccttatgcaactataattgaagacattcgggctcttttgattgctaggccagataccaaaatttgttttgctcctagatcgtgcaacaaggttacacataggctggctagtttagcttttgatgaccattgtaatgctgtttggattaacgatccaccagcttgtattcttgatatactagccaaagaccatgttggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

160

Amino Acids

17.71

Weight (kDa)

6.17

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 2 cut(s) 29, 342
AgsI TTSAA 4 cut(s) 109, 187, 260, 302
AhdI GACNNNNNGTC 1 cut(s) 234
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 4 cut(s) 62, 245, 398, 443
AluI AGCT 4 cut(s) 62, 245, 398, 443
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 2 cut(s) 221, 242
AlwI GGATC 1 cut(s) 428
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 3 cut(s) 8, 113, 142
ApoI RAATTY 2 cut(s) 29, 342
Asp700I GAANNNNTTC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 100, 154
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 221, 242
BfaI CTAG 4 cut(s) 327, 357, 390, 461
BfmI CTRYAG 1 cut(s) 63
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 3 cut(s) 9, 114, 143
BlsI GCNGC 3 cut(s) 10, 115, 144
Bme1390I CCNGG 1 cut(s) 207
BmeRI GACNNNNNGTC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 309
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpuEI CTTGAG 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 100, 154
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 221, 242
BsnI GGCC 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 85, 316
Bsp143I GATC 3 cut(s) 274, 359, 433
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 99
BspPI GGATC 1 cut(s) 428
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 3 cut(s) 274, 359, 433
Bst2UI CCWGG 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 147, 387
BstDEI CTNAG 1 cut(s) 86
BstKTI GATC 3 cut(s) 277, 362, 436
BstMAI GTCTC 2 cut(s) 221, 242
BstMBI GATC 3 cut(s) 274, 359, 433
BstMWI GCNNNNNNNGC 2 cut(s) 52, 395
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 100, 154
BstV2I GAAGAC 1 cut(s) 309
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 147, 387
CviAII CATG 4 cut(s) 18, 23, 146, 473
DdeI CTNAG 1 cut(s) 86
DpnI GATC 3 cut(s) 276, 361, 435
DpnII GATC 3 cut(s) 274, 359, 433
DriI GACNNNNNGTC 1 cut(s) 234
Eam1105I GACNNNNNGTC 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 4 cut(s) 21, 26, 149, 476
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 4 cut(s) 17, 22, 145, 472
Fnu4HI GCNGC 3 cut(s) 9, 114, 143
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 3 cut(s) 9, 114, 143
FspBI CTAG 4 cut(s) 327, 357, 390, 461
GluI GCNGC 3 cut(s) 9, 114, 143
HaeIII GGCC 1 cut(s) 331
Hin1II CATG 4 cut(s) 21, 26, 149, 476
Hpy188III TCNNGA 1 cut(s) 452
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 5 cut(s) 36, 142, 218, 290, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 395
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 4 cut(s) 21, 26, 149, 476
Kzo9I GATC 3 cut(s) 274, 359, 433
LmnI GCTCC 2 cut(s) 80, 358
LpnPI CCDG 8 cut(s) 73, 140, 141, 192, 219, 345, 371, 453
Lsp1109I GCAGC 2 cut(s) 100, 154
MaeI CTAG 4 cut(s) 327, 357, 390, 461
MaeIII GTNAC 1 cut(s) 373
MalI GATC 3 cut(s) 276, 361, 435
MboI GATC 3 cut(s) 274, 359, 433
MboII GAAGA 1 cut(s) 314
MhlI GDGCHC 2 cut(s) 85, 316
MluCI AATT 3 cut(s) 29, 297, 342
MnlI CCTC 2 cut(s) 71, 172
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 52, 395
NdeII GATC 3 cut(s) 274, 359, 433
NlaIII CATG 4 cut(s) 21, 26, 149, 476
NspI RCATGY 1 cut(s) 149
PaeI GCATGC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 306
PkrI GCNGC 3 cut(s) 10, 115, 144
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 414
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 3 cut(s) 9, 114, 143
Sau3AI GATC 3 cut(s) 274, 359, 433
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 2 cut(s) 85, 316
SetI ASST 7 cut(s) 64, 159, 247, 286, 375, 400, 445
SfcI CTRYAG 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
SphI GCATGC 1 cut(s) 149
Sse9I AATT 3 cut(s) 29, 297, 342
SspMI CTAG 4 cut(s) 327, 357, 390, 461
StyD4I CCNGG 1 cut(s) 205
TasI AATT 3 cut(s) 29, 297, 342
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseI GCWGC 3 cut(s) 8, 113, 142
TspDTI ATGAA 2 cut(s) 42, 109
XapI RAATTY 2 cut(s) 29, 342
XceI RCATGY 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 4 cut(s) 327, 357, 390, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.