Rorug03G0228900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000519
Physical Location & Seq
Forward (+)
20993074 .. 20993425
352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0228900.1

Sequence Viewer

Length: 180 bp
ATGTCGTGCGAGAACAAGATGCTCGTCTTCGACGGCTTCGGAGCCATGTTTGTTGGTTGTTGCGATGGCGTTGTGGGCGGCGATGGGAGGGTTCATCTGAGACTTGACCCTAGAGTAGTGGTCGGAGATGTTGACCATGACCAGAGGGTGGAGCTTGAACGTGAGACCACTGCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

59

Amino Acids

6.5

Weight (kDa)

4.85

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 148
AciI CCGC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 94, 158
BbsI GAAGAC 1 cut(s) 19
BccI CCATC 2 cut(s) 59, 77
BceAI ACGGC 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 94, 158
BfaI CTAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 43
BmsI GCATC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 94, 158
Bso31I GGTCTC 1 cut(s) 158
BspACI CCGC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 43
BspTNI GGTCTC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 98
BstMAI GTCTC 2 cut(s) 94, 158
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 19
BtgZI GCGATG 2 cut(s) 78, 96
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
CviAII CATG 2 cut(s) 46, 137
CviJI RGCY 3 cut(s) 36, 44, 154
CviKI_1 RGCY 3 cut(s) 36, 44, 154
DdeI CTNAG 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 158
FaeI CATG 2 cut(s) 49, 140
FaiI YATR 2 cut(s) 47, 138
FatI CATG 2 cut(s) 45, 136
Fnu4HI GCNGC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 1 cut(s) 111
GluI GCNGC 1 cut(s) 79
Hin1II CATG 2 cut(s) 49, 140
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 41, 99, 125
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 2 cut(s) 49, 140
LmnI GCTCC 2 cut(s) 41, 151
LpnPI CCDG 1 cut(s) 155
LweI GCATC 1 cut(s) 9
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 160
MboII GAAGA 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 2 cut(s) 81, 138
MwoI GCNNNNNNNGC 1 cut(s) 75
NlaIII CATG 2 cut(s) 49, 140
NlaIV GGNNCC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 43
SatI GCNGC 1 cut(s) 79
SetI ASST 2 cut(s) 156, 163
SfaNI GCATC 1 cut(s) 9
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 111
TaiI ACGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 30, 175
TauI GCSGC 1 cut(s) 81
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 148
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.