Rmu_sc0002687.1_g000008

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002687.1
OG0000519
Physical Location & Seq
Reverse (-)
42599 .. 42955
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002687.1_g000008.1.cds

Sequence Viewer

Length: 357 bp
atgggataccaacttgggccaagcccatcaagtgaaagccaatatcagcatcttgatctggcacaacagatgcaaatgtcacaggtttccatcgaatctaactgtcttgctgcagttcaacagattgcccattccgactcgagtttctctgattttggtaatatcagtgatgacattcagcaggacctaagaggtccacaagatgtccagatcaattttgctcctagaacttacaaccaggttgctcacagactagcaaatatcggttttgaatccggtcaaaatgaagcttggttcactcaagctcctagttgtattagtgacttgcttcaacatgattgtaaccagttgagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

118

Amino Acids

13.08

Weight (kDa)

4.25

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 119, 272, 332
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 3 cut(s) 290, 305, 354
AluI AGCT 3 cut(s) 290, 305, 354
Ama87I CYCGRG 1 cut(s) 139
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 17, 184, 194
AvaI CYCGRG 1 cut(s) 139
AvaII GGWCC 2 cut(s) 184, 194
BbvI GCAGC 1 cut(s) 97
BccI CCATC 2 cut(s) 34, 98
BciT130I CCWGG 1 cut(s) 239
BfaI CTAG 4 cut(s) 225, 254, 309, 355
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 2 cut(s) 184, 194
BmeT110I CYCGRG 1 cut(s) 139
BmgT120I GGNCC 3 cut(s) 17, 184, 194
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 2 cut(s) 58, 60
BpuEI CTTGAG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 1 cut(s) 276
BsnI GGCC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 139
Bsp143I GATC 2 cut(s) 55, 210
BspANI GGCC 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 346
BssMI GATC 2 cut(s) 55, 210
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 188
BstKTI GATC 2 cut(s) 58, 213
BstMBI GATC 2 cut(s) 55, 210
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 17, 184, 194
CsiI ACCWGGT 1 cut(s) 237
CviAII CATG 1 cut(s) 335
CviJI RGCY 6 cut(s) 19, 24, 39, 290, 305, 354
CviKI_1 RGCY 6 cut(s) 19, 24, 39, 290, 305, 354
DdeI CTNAG 1 cut(s) 188
DpnI GATC 2 cut(s) 57, 212
DpnII GATC 2 cut(s) 55, 210
Eco47I GGWCC 2 cut(s) 184, 194
Eco88I CYCGRG 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 237
FaeI CATG 1 cut(s) 338
FaiI YATR 1 cut(s) 336
FatI CATG 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 4 cut(s) 225, 254, 309, 355
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 276
Hin1II CATG 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 3 cut(s) 95, 137, 272
HpaII CCGG 1 cut(s) 276
Hpy166II GTNNAC 2 cut(s) 197, 297
Hpy188I TCNGA 2 cut(s) 136, 151
Hpy188III TCNNGA 2 cut(s) 53, 208
Hpy8I GTNNAC 2 cut(s) 197, 297
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 73, 113
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 1 cut(s) 338
Kzo9I GATC 2 cut(s) 55, 210
LmnI GCTCC 2 cut(s) 226, 310
LpnPI CCDG 7 cut(s) 44, 68, 167, 221, 224, 251, 289
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 2 cut(s) 58, 60
MabI ACCWGGT 1 cut(s) 237
MaeI CTAG 4 cut(s) 225, 254, 309, 355
MaeIII GTNAC 3 cut(s) 78, 320, 341
MalI GATC 2 cut(s) 57, 212
MboI GATC 2 cut(s) 55, 210
MluCI AATT 1 cut(s) 214
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 1 cut(s) 185
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
NdeII GATC 2 cut(s) 55, 210
NlaIII CATG 1 cut(s) 338
NmuCI GTSAC 2 cut(s) 78, 320
PaeR7I CTCGAG 1 cut(s) 139
PfeI GAWTC 2 cut(s) 95, 272
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspPI GGNCC 3 cut(s) 17, 184, 194
PspPPI RGGWCCY 1 cut(s) 184
PspXI VCTCGAGB 1 cut(s) 139
PstI CTGCAG 1 cut(s) 115
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 55, 210
Sau96I GGNCC 3 cut(s) 17, 184, 194
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 239
SetI ASST 7 cut(s) 87, 189, 196, 243, 292, 307, 356
SexAI ACCWGGT 1 cut(s) 237
SfaNI GCATC 2 cut(s) 58, 60
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 139
SinI GGWCC 2 cut(s) 184, 194
SlaI CTCGAG 1 cut(s) 139
SmlI CTYRAG 2 cut(s) 139, 300
SmoI CTYRAG 2 cut(s) 139, 300
Sse9I AATT 1 cut(s) 214
SspMI CTAG 4 cut(s) 225, 254, 309, 355
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 93, 140
TasI AATT 1 cut(s) 214
TfiI GAWTC 2 cut(s) 95, 272
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 2 cut(s) 78, 320
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 2 cut(s) 78, 320
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 2 cut(s) 184, 194
XhoI CTCGAG 1 cut(s) 139
XspI CTAG 4 cut(s) 225, 254, 309, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.