Rorug05G0165600

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000519
Physical Location & Seq
Forward (+)
15328542 .. 15329252
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0165600.1

Sequence Viewer

Length: 711 bp
ATGACTACTCTAACAGATTTCAAGTTCAATGCTTATGCCTTATATCATGCGTATGAACAACAAATAATGGTGACCAGAGGAAGAGAATTCCAATATAACAAGACTCTGAGGTGGGTAAAAAGCATAGATCTTTCCTCAAATAGTTTGGAAGGTGAAATCCCTGAAAAAATCTGCAGTCTCTTCGCATTGGTTATCTTGAACTTGTCGATGAATCATCTGAGTGGAAATATTCCCTCGAAAATTGGAAACTTGTGGTCTCTCGAATTCCTTGATCTCTCAGGCAACCACCTTTCGGGACGAATTCCTCAGAGTATTTCATCTTTAACCTATTTGTCTCACTTGAATTTGTCTTACAACGAATTGAGCGGAAGAATTCCTTTGGGCAACCAACTTCAAGCACTTGATGATTCAACCAATATTTATGGAGGCAATCCATTACTTTGTGGGTTTCCCCTTTTAAACAAGTGCCCAGGAGATGACACACCTCCACAACCCACTTTTCATCGTGGGAAAATACCTGAAGATGATCAAAAGCTTGGTTTCTACATCAGTGCAGTGCTCGGCTTTGTCATAGGCTTTTGGGGTGTTTGTGGCACATTACTCATAAAGAAGTCATGGAGGTATGCCTACTTCCAATTTTTTGATAGCATCCAAGACAAGGTCGCGGTGGCAGTTGCATTGAAAATAGCTAATTTCCAGAGGAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

236

Amino Acids

26.55

Weight (kDa)

8.28

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 43 - 120 1.8e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 366
AccII CGCG 1 cut(s) 665
AciI CCGC 2 cut(s) 366, 665
AcsI RAATTY 6 cut(s) 86, 263, 300, 343, 372, 705
AcuI CTGAAG 1 cut(s) 540
AfiI CCNNNNNNNGG 2 cut(s) 292, 658
AgsI TTSAA 7 cut(s) 22, 28, 199, 343, 395, 411, 682
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 2 cut(s) 535, 689
AluI AGCT 2 cut(s) 535, 689
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 3 cut(s) 182, 261, 339
ApoI RAATTY 6 cut(s) 86, 263, 300, 343, 372, 705
AsuHPI GGTGA 2 cut(s) 82, 164
BaeGI GKGCMC 1 cut(s) 470
BarI GAAGNNNNNNTAC 2 cut(s) 614, 646
Bbv12I GWGCWC 1 cut(s) 561
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BciT130I CCWGG 1 cut(s) 471
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 3 cut(s) 182, 261, 339
BfmI CTRYAG 1 cut(s) 172
BglII AGATCT 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 471
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 469
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 658
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 469
BseGI GGATG 1 cut(s) 648
BseLI CCNNNNNNNGG 2 cut(s) 292, 658
BseMII CTCAG 4 cut(s) 98, 209, 291, 320
BseSI GKGCMC 1 cut(s) 470
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 665
BsiHKAI GWGCWC 1 cut(s) 561
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 2 cut(s) 292, 658
BsmAI GTCTC 3 cut(s) 182, 261, 339
BsmFI GGGAC 1 cut(s) 309
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 470, 561
Bsp143I GATC 3 cut(s) 127, 271, 526
BspACI CCGC 2 cut(s) 366, 665
BspCNI CTCAG 4 cut(s) 99, 210, 290, 319
BspFNI CGCG 1 cut(s) 665
BspMAI CTGCAG 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 469
BssMI GATC 3 cut(s) 127, 271, 526
Bst2UI CCWGG 1 cut(s) 471
Bst6I CTCTTC 2 cut(s) 76, 185
BstDEI CTNAG 4 cut(s) 107, 218, 277, 306
BstEII GGTNACC 1 cut(s) 70
BstF5I GGATG 1 cut(s) 648
BstFNI CGCG 1 cut(s) 665
BstKTI GATC 3 cut(s) 130, 274, 529
BstMAI GTCTC 3 cut(s) 182, 261, 339
BstMBI GATC 3 cut(s) 127, 271, 526
BstNI CCWGG 1 cut(s) 471
BstPI GGTNACC 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 469
BstSFI CTRYAG 1 cut(s) 172
BstSLI GKGCMC 1 cut(s) 470
BstUI CGCG 1 cut(s) 665
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BtsCI GGATG 1 cut(s) 648
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 2 cut(s) 556, 561
CviAII CATG 2 cut(s) 47, 615
CviJI RGCY 4 cut(s) 535, 564, 576, 689
CviKI_1 RGCY 4 cut(s) 535, 564, 576, 689
DdeI CTNAG 4 cut(s) 107, 218, 277, 306
DpnI GATC 3 cut(s) 129, 273, 528
DpnII GATC 3 cut(s) 127, 271, 526
DraI TTTAAA 1 cut(s) 459
Eam1104I CTCTTC 2 cut(s) 76, 185
EarI CTCTTC 2 cut(s) 76, 185
Eco31I GGTCTC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 540
Eco91I GGTNACC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 70
EcoRI GAATTC 4 cut(s) 86, 263, 300, 372
EcoRII CCWGG 1 cut(s) 469
FaeI CATG 2 cut(s) 50, 618
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FaqI GGGAC 1 cut(s) 309
FatI CATG 2 cut(s) 46, 614
FbaI TGATCA 1 cut(s) 526
FokI GGATG 1 cut(s) 635
Hin1II CATG 2 cut(s) 50, 618
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 3 cut(s) 103, 211, 407
HphI GGTGA 2 cut(s) 82, 164
Hpy188I TCNGA 3 cut(s) 108, 219, 309
Hpy188III TCNNGA 4 cut(s) 196, 260, 294, 697
HpyAV CCTTC 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 174, 554, 677
HpyF3I CTNAG 4 cut(s) 107, 218, 277, 306
Hsp92II CATG 2 cut(s) 50, 618
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 3 cut(s) 127, 271, 526
LpnPI CCDG 6 cut(s) 88, 174, 264, 456, 483, 531
LweI GCATC 1 cut(s) 657
MaeIII GTNAC 1 cut(s) 70
MalI GATC 3 cut(s) 129, 273, 528
MbiI CCGCTC 1 cut(s) 366
MboI GATC 3 cut(s) 127, 271, 526
MboII GAAGA 4 cut(s) 93, 172, 381, 533
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 470, 561
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 9 cut(s) 71, 102, 145, 244, 315, 419, 495, 612, 693
MseI TTAA 3 cut(s) 323, 458, 709
MslI CAYNNNNRTG 2 cut(s) 51, 219
MspR9I CCNGG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 471
MvnI CGCG 1 cut(s) 665
NdeII GATC 3 cut(s) 127, 271, 526
NlaIII CATG 2 cut(s) 50, 618
NmeAIII GCCGAG 1 cut(s) 540
NmuCI GTSAC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 211, 407
PflFI GACNNNGTC 1 cut(s) 659
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 469
PspEI GGTNACC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 469
PstI CTGCAG 1 cut(s) 176
PsuI RGATCY 1 cut(s) 127
PsyI GACNNNGTC 1 cut(s) 659
RseI CAYNNNNRTG 2 cut(s) 51, 219
SaqAI TTAA 3 cut(s) 323, 458, 709
Sau3AI GATC 3 cut(s) 127, 271, 526
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 2 cut(s) 470, 561
SfaNI GCATC 1 cut(s) 657
SfcI CTRYAG 1 cut(s) 172
SmiMI CAYNNNNRTG 2 cut(s) 51, 219
SsiI CCGC 2 cut(s) 366, 665
SspI AATATT 2 cut(s) 229, 418
StyD4I CCNGG 1 cut(s) 469
TaqI TCGA 3 cut(s) 206, 236, 261
TfiI GAWTC 2 cut(s) 211, 407
Tru1I TTAA 3 cut(s) 323, 458, 709
Tru9I TTAA 3 cut(s) 323, 458, 709
TscAI CASTG 2 cut(s) 556, 561
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 4 cut(s) 69, 224, 306, 491
TspRI CASTG 2 cut(s) 556, 561
Tth111I GACNNNGTC 1 cut(s) 659
XapI RAATTY 6 cut(s) 86, 263, 300, 343, 372, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.