Rmu_sc0001374.1_g000060

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001374.1
OG0000519
Physical Location & Seq
Reverse (-)
188249 .. 188746
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001374.1_g000060.1.cds

Sequence Viewer

Length: 297 bp
atgtggctacctcctgtggctggtaaactaaagctcaatgtagatggagctttttcgcctaatcaactgagggaggagttggaggtgttctcagggatgctcatggttgaacttttagctgttaaagcgcgcaggaattgggtctcgctttcccatgcacctagaactgcaaatgtagttgctcacaggcttgcaagtgaagcctatgactctgttaaaagcttagaatggaatgttgttgttgttcctgagctgcttagagatgttctaagctttgattgtaacaatattggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

98

Amino Acids

10.93

Weight (kDa)

6.07

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 6 cut(s) 34, 50, 119, 222, 253, 273
AluI AGCT 6 cut(s) 34, 50, 119, 222, 253, 273
Alw26I GTCTC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 253
AspLEI GCGC 2 cut(s) 130, 132
BbvI GCAGC 1 cut(s) 240
BccI CCATC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
BmsI GCATC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 74, 106
Bpu10I CCTNAGC 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 3 cut(s) 59, 105, 240
BsePI GCGCGC 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 148
Bso31I GGTCTC 1 cut(s) 148
BspCNI CTCAG 3 cut(s) 60, 104, 241
BspFNI CGCG 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 148
BssHII GCGCGC 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 130, 192
BstDEI CTNAG 6 cut(s) 68, 91, 223, 249, 257, 269
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 2 cut(s) 130, 132
BstMAI GTCTC 1 cut(s) 148
BstMWI GCNNNNNNNGC 2 cut(s) 125, 200
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 130, 192
CfoI GCGC 2 cut(s) 130, 132
CviAII CATG 2 cut(s) 103, 155
DdeI CTNAG 6 cut(s) 68, 91, 223, 249, 257, 269
Eco31I GGTCTC 1 cut(s) 148
FaeI CATG 2 cut(s) 106, 158
FaiI YATR 3 cut(s) 104, 156, 207
FatI CATG 2 cut(s) 102, 154
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 1 cut(s) 162
GlaI GCGC 2 cut(s) 129, 131
GluI GCNGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 130, 132
Hin1II CATG 2 cut(s) 106, 158
Hin6I GCGC 2 cut(s) 128, 130
HinP1I GCGC 2 cut(s) 128, 130
HindIII AAGCTT 2 cut(s) 220, 271
HinfI GANTC 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 158, 170, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 200
HpyF3I CTNAG 6 cut(s) 68, 91, 223, 249, 257, 269
Hsp92II CATG 2 cut(s) 106, 158
HspAI GCGC 2 cut(s) 128, 130
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 6 cut(s) 6, 27, 78, 118, 172, 261
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 281
MluCI AATT 1 cut(s) 136
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 4 cut(s) 21, 63, 67, 76
MseI TTAA 2 cut(s) 123, 216
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 2 cut(s) 125, 200
NlaIII CATG 2 cut(s) 106, 158
PauI GCGCGC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 255
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PteI GCGCGC 1 cut(s) 128
SaqAI TTAA 2 cut(s) 123, 216
SatI GCNGC 1 cut(s) 254
SchI GAGTC 1 cut(s) 203
SetI ASST 9 cut(s) 13, 36, 52, 87, 121, 163, 224, 255, 275
SfaNI GCATC 1 cut(s) 87
Sse9I AATT 1 cut(s) 136
SspI AATATT 1 cut(s) 289
SspMI CTAG 1 cut(s) 162
TasI AATT 1 cut(s) 136
Tru1I TTAA 2 cut(s) 123, 216
Tru9I TTAA 2 cut(s) 123, 216
TseI GCWGC 1 cut(s) 253
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.