Rorug07G0015500

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000519
Physical Location & Seq
Forward (+)
1218635 .. 1225688
7054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0015500.1

Sequence Viewer

Length: 3084 bp
ATGAAGAACCTTCTTAAGAAGCTCCATATCATGTCCAACCAATCAGAAGATTCAGCAGAGGGGTCTACTTCATCAAAGAGCAGCACTAAGGCTATTGATAAGTCGTCTTCCGAGACTGAGACGCTATTGCACTCAAGGTCCCAGCAGAGTTCTGAGCATAAACACTTGTCTGGGATATCAAGTTGGCTCAATTCAGTGGCTAATAGAAAGAGCCCCAGTCCCCCATCATCTTCAAATGTTACGAAGGGGGAGAGAATTGAGCAACCTGAAGCAGGTAGTAGGAGTGGTGGGGATGTTGTTTCGGATACAGCTAGGCGTGATTCGGGGTCTAGTACTTCAAGGGATGCTGATATAATGGAGGAGTATCAGATTCAACTGGCTTTGGAGTTGAGTGCTAGGGAGGATCCAGAGGCAGTTCAGATTGAGGCTGTTAAGCAGATTAGCTTAGGCTCTTGTGCTCCGGATAATACTCCGGCTGAAGTTATTGCCTATCGTTATTGGAATTACAATGCTCTTAGCTATGATGATAAGATCATGGATGGTTTCTATGACCTGTATGGAATATTGACGGAGTCAACCTCAGAAAGAATGCCTTCCCTTGTTGATCTGCAAGGAACAGCTGTCTCAGATAATGTCAACTGGGAAGCAGTTTTGGTCAATAGAGCTGCCGATGCGAATTTATTGAAACTTGAACAGATGGCCCTAGAAATGGCTGTAAAGTCACGTTCAGATCTTCGGGTTACCGTAAACAGAAATTTGGTGCGAAAACTTGCTCTTTTAGTTGCTAACTCTATGGGTGGACCAGTTGCAAATCCTTACAACATGTTGAAGGCATGGCAAAATCTTAGCCAGAGTCTGAAAGCAACTCTTGGTAGCATGGTTTTGCCACTTGGTTCTCTGACAATTGGATTAGCTCGGCATCGTGCATTGTTGTTCAAGGCTTTGGCTGATAGTGTTGGCATCCCATGCCGATTGGTGAAAGGACAACAATACACGGGTTCCAATGATGTAGCAATGAACTTTGTAAAGATTGATGATGGAAGGGAGTATATTGTTGATCTGATGGCTGACCCCGGCACACTTATTCCATCTGATGAAGCTGGATCACATATAGAATATGATGAACCTTACTTTTCTGCCAGTCCTTTGTCTAGAGACATTGACTCTTCTCATGTAGCCTCTTCCAGTAGTGGAATTGGGAGTTCATTTGAAGAACATTCAGACTTTGGGACATTAGACAAAAAATCCAGGTTAAGAAATTATAGTTCTGCAGACAGGGAATCTGAAGAGACAGAAGCCCCGTTTTTTCGTGAAAATTTACCCAGACCAACTGAATGTGAGGAGGAATCCAAGATACCGTCAGCTGATTTGAGATACTCCTCTGATGTGGAGAAGGCGCTGGTGCAAGAACTGCCAGGAAGGCCAAGTTATACACATGCAAGATCCCCTTCGTGGACCGAAGGTGTTAGCTCTCCTGCAGTTCGTAAAAAGAAAGTTAAGGATGTTTCAAAATACATGATTGTTGCTGCCAAAGAGAATCCAAATTTAGCTCAAAAACTTCATGATGTGTTACTTGAAAGTGGTGTTGTTGCTCCCAGAAATTTGTTTACGGAAATATATCCAGAGCAGTTAGATGTGTCAACCCGAACAGAAGATAAGGGGGGAAATAAGGAGAGGTTTGAAATGAAAAAGAGTAAAGGTCAAGATGATATCAGTTCGACTCACTCTTTGCCTCCACTACCTCAGCACAGGGTGCATTCTAAAGCTAGTCCTTCAGGTCAGCCAGAGCATCTTAAGCCTGTGGAAGGTTTAGGGGTCAGCCTTCCACTTGATACCAGGGAAGTAGCTGGCCAGAATATCTCATCACAGTCTGATGCAACTCCAGTTAAATATACAAAAAGTGTGCCTGTTGCTGCAGCAGCAGCGGCCGCAGCAGCTGTTGTCGCATCTTCTATGGTAGTTGCAGTAACAAAGTCAAGCGCTGACTCAAATATTCCTGTAGCAGCTGCTGCAACTGCTACTGCTGCAGCAGTGGTTGCAACAACTGCAGCTGTCAACAAGCAGTATGAGCAGGGAACAAGAAGTGATGGGGATGCAGAAGGTTCTGGTTGTGAACCACATGGCAGTGGGGACCGTGAGCATGATGCTTCGGCAGTTATCTCGGAAGGCGAGAGAGTCTCGGATCGATCGGCAGGTAACGAAAGTACAAGATCTGATATTGGTGATGATGTAGCAGATTGCGAGATTCCATGGGAGGATATCACCTTGGGCGAACGAATTGGACTTGGATCGTATGGGGAGGTCTATCATGGAGACTGGCATGGGACGGAGGTTGCTGTTAAGAGGTTTCTAGACCAAGATTTTTTGGGTGAATCACTTGATGAATTCAGAAGTGAGGTTCGGATAATGAAAAGACTCAGACATCCCAATGTTGTTCTCTTCATGGGAGCAATAACTCGTGCTCCAAATCTTTCCATTGTTACAGAATTTCTTCCAAGAGGTAGTTTATATAGGTTGTTACACCGGCCTAACAATCAATTAGACGAGCGAAGGCGCTTGAGGATGGCTCTTGATGCTGCTCGGGGAATGAATTACTTGCATAACTGCACTCCAGTAATAGTACACCGTGATTTGAAGTCTCCAAACCTTCTCGTTGATAAGAATTGGGTCGTAAAGGTCTGTGATTTTGGATTATCAAGAATGAAGAACAGCACATTTCTCTCCTCGAGGTCCACTGCAGGGACGGCTGAATGGATGGCTCCAGAAGTGCTAAGAAACGAACCTTCAGATGAAAAGTGCGATGTTTATAGCTATGGGGTCATATTGTGGGAGCTCTCTACAATGCAACAGCCATGGGGAGGAATGAACCCAATGCAAGTCGTTGGTGCAGTTGGATTTCAACATCGCCGTCTTGATATTCCAAATGATATTGATCCTGCAATTGCAGATCTTATTGAAAAATGCTGGCAGACAGATCCAAAATTGAGACCCTCATTTGCTGAGATCATGGCTATCCTGAAGCCGTTGCAGAAGCCGATAAGTAGTTCTGCAGTGCCTAGATCTACTGCACAAAGGCCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

1027

Amino Acids

112.17

Weight (kDa)

5.55

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 159 - 362 1.4e-76 EDR1/CTR1/ARMC3, peptidase-like
PK_Tyr_Ser-Thr PF07714 754 - 1005 2.4e-66 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 756 - 1003 2.7e-52 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 2725
Acc36I ACCTGC 2 cut(s) 263, 2183
AccI GTMKAC 1 cut(s) 65
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 2 cut(s) 1925, 1929
AclWI GGATC 8 cut(s) 398, 411, 1111, 1437, 2190, 2296, 2927, 2969
AcoI YGGCCR 2 cut(s) 1849, 1926
AcsI RAATTY 7 cut(s) 676, 754, 1315, 1543, 1600, 2384, 2486
AcuI CTGAAG 6 cut(s) 288, 498, 1305, 1758, 2769, 3038
AdeI CACNNNGTG 1 cut(s) 1753
AfaI GTAC 3 cut(s) 334, 2206, 2622
AfeI AGCGCT 1 cut(s) 1981
AfiI CCNNNNNNNGG 6 cut(s) 272, 709, 1452, 1805, 2739, 2858
AflII CTTAAG 2 cut(s) 14, 1793
AflIII ACRYGT 1 cut(s) 822
AjnI CCWGG 3 cut(s) 1247, 1414, 1835
Alw21I GWGCWC 3 cut(s) 460, 2464, 2835
Alw26I GTCTC 9 cut(s) 107, 113, 628, 1149, 1283, 2182, 2307, 2643, 2980
AlwI GGATC 8 cut(s) 398, 411, 1111, 1437, 2190, 2296, 2927, 2969
AlwNI CAGNNNCTG 3 cut(s) 856, 1937, 2009
Ama87I CYCGRG 2 cut(s) 2580, 2725
Aor13HI TCCGGA 1 cut(s) 460
Aor51HI AGCGCT 1 cut(s) 1981
AoxI GGCC 6 cut(s) 699, 1421, 1849, 1926, 2525, 3074
ApoI RAATTY 7 cut(s) 676, 754, 1315, 1543, 1600, 2384, 2486
ArsI GACNNNNNNTTYG 2 cut(s) 1711, 1743
Asp700I GAANNNNTTC 2 cut(s) 592, 2490
AspLEI GCGC 3 cut(s) 1399, 1982, 2556
AspS9I GGNCC 6 cut(s) 138, 700, 800, 1455, 2131, 2730
AsuC2I CCSGG 1 cut(s) 1074
AsuHPI GGTGA 4 cut(s) 988, 2234, 2254, 2381
AvaI CYCGRG 2 cut(s) 2580, 2725
AvaII GGWCC 5 cut(s) 138, 800, 1455, 2131, 2730
BalI TGGCCA 1 cut(s) 1851
BamHI GGATCC 1 cut(s) 403
BanII GRGCYC 2 cut(s) 215, 2835
BauI CACGAG 1 cut(s) 2457
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 3 cut(s) 460, 2464, 2835
BbvCI CCTCAGC 1 cut(s) 1743
BccI CCATC 9 cut(s) 232, 533, 691, 1031, 1057, 1096, 2081, 2557, 2749
BceAI ACGGC 3 cut(s) 2760, 2892, 3007
BcgI CGANNNNNNTGC 2 cut(s) 2142, 2176
BciT130I CCWGG 3 cut(s) 1249, 1416, 1837
BciVI GTATCC 1 cut(s) 298
BcnI CCSGG 1 cut(s) 1074
BcoDI GTCTC 9 cut(s) 107, 113, 628, 1149, 1283, 2182, 2307, 2643, 2980
BfaI CTAG 8 cut(s) 312, 330, 396, 704, 1152, 1767, 2351, 3057
BfmI CTRYAG 8 cut(s) 1269, 1476, 1914, 1998, 2025, 2046, 2736, 3048
BfoI RGCGCY 3 cut(s) 1400, 1983, 2557
BfrI CTTAAG 2 cut(s) 14, 1793
BfuAI ACCTGC 2 cut(s) 263, 2183
BfuI GTATCC 1 cut(s) 298
BglI GCCNNNNNGGC 1 cut(s) 1420
BglII AGATCT 4 cut(s) 730, 2210, 2947, 3059
BmcAI AGTACT 1 cut(s) 334
Bme1390I CCNGG 4 cut(s) 1074, 1249, 1416, 1837
Bme18I GGWCC 5 cut(s) 138, 800, 1455, 2131, 2730
BmeT110I CYCGRG 2 cut(s) 2580, 2725
BmgT120I GGNCC 6 cut(s) 138, 700, 800, 1455, 2131, 2730
BmiI GGNNCC 5 cut(s) 140, 405, 1000, 2132, 2760
BmrFI CCNGG 4 cut(s) 1074, 1249, 1416, 1837
BmrI ACTGGG 2 cut(s) 210, 649
BmuI ACTGGG 2 cut(s) 210, 649
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 6 cut(s) 563, 595, 2162, 2194, 2551, 2583
BpmI CTGGAG 3 cut(s) 1866, 2595, 2745
Bpu10I CCTNAGC 2 cut(s) 445, 1743
BpuEI CTTGAG 2 cut(s) 118, 2578
BpuMI CCSGG 1 cut(s) 1074
Bsa29I ATCGAT 1 cut(s) 2185
BsaBI GATNNNNATC 1 cut(s) 2931
BsaI GGTCTC 1 cut(s) 2980
BsaJI CCNNGG 5 cut(s) 1072, 1836, 2249, 2265, 2852
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 2446, 2476
Bsc4I CCNNNNNNNGG 6 cut(s) 272, 709, 1452, 1805, 2739, 2858
Bse118I RCCGGY 1 cut(s) 2523
Bse1I ACTGG 9 cut(s) 216, 381, 644, 803, 1140, 1185, 1883, 2321, 2612
Bse3DI GCAATG 1 cut(s) 1020
Bse8I GATNNNNATC 1 cut(s) 2931
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 3 cut(s) 1249, 1416, 1837
BseCI ATCGAT 1 cut(s) 2185
BseDI CCNNGG 5 cut(s) 1072, 1836, 2249, 2265, 2852
BseJI GATNNNNATC 1 cut(s) 2931
BseLI CCNNNNNNNGG 6 cut(s) 272, 709, 1452, 1805, 2739, 2858
BseMI GCAATG 1 cut(s) 1020
BseMII CTCAG 7 cut(s) 108, 144, 594, 639, 1757, 2431, 2991
BseNI ACTGG 9 cut(s) 216, 381, 644, 803, 1140, 1185, 1883, 2321, 2612
BseRI GAGGAG 4 cut(s) 374, 1355, 1369, 2713
BseX3I CGGCCG 1 cut(s) 1926
BseYI CCCAGC 1 cut(s) 141
BsgI GTGCAG 3 cut(s) 2590, 2907, 3051
Bsh1285I CGRYCG 2 cut(s) 1929, 2189
BshFI GGCC 6 cut(s) 701, 1423, 1851, 1928, 2527, 3076
BshVI ATCGAT 1 cut(s) 2185
BsiEI CGRYCG 2 cut(s) 1929, 2189
BsiHKAI GWGCWC 3 cut(s) 460, 2464, 2835
BsiHKCI CYCGRG 2 cut(s) 2580, 2725
BsiSI CCGG 4 cut(s) 461, 473, 1074, 2524
BslFI GGGAC 6 cut(s) 124, 204, 1243, 2144, 2338, 2755
BslI CCNNNNNNNGG 6 cut(s) 272, 709, 1452, 1805, 2739, 2858
BsmAI GTCTC 9 cut(s) 107, 113, 628, 1149, 1283, 2182, 2307, 2643, 2980
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 6 cut(s) 124, 204, 1243, 2144, 2338, 2755
BsmI GAATGC 2 cut(s) 594, 1756
BsnI GGCC 6 cut(s) 701, 1423, 1851, 1928, 2527, 3076
Bso31I GGTCTC 1 cut(s) 2980
BsoBI CYCGRG 2 cut(s) 2580, 2725
Bsp1286I GDGCHC 4 cut(s) 215, 460, 2464, 2835
Bsp13I TCCGGA 1 cut(s) 460
Bsp19I CCATGG 2 cut(s) 2249, 2852
BspACI CCGC 2 cut(s) 1925, 1929
BspANI GGCC 6 cut(s) 701, 1423, 1851, 1928, 2527, 3076
BspCNI CTCAG 7 cut(s) 109, 145, 593, 638, 1756, 2430, 2992
BspDI ATCGAT 1 cut(s) 2185
BspEI TCCGGA 1 cut(s) 460
BspHI TCATGA 1 cut(s) 1561
BspLI GGNNCC 5 cut(s) 140, 405, 1000, 2132, 2760
BspMAI CTGCAG 7 cut(s) 1273, 1480, 1918, 2029, 2050, 2740, 3052
BspMI ACCTGC 2 cut(s) 263, 2183
BspPI GGATC 8 cut(s) 398, 411, 1111, 1437, 2190, 2296, 2927, 2969
BspTI CTTAAG 2 cut(s) 14, 1793
BspTNI GGTCTC 1 cut(s) 2980
BsrDI GCAATG 1 cut(s) 1020
BsrFI RCCGGY 1 cut(s) 2523
BsrI ACTGG 9 cut(s) 216, 381, 644, 803, 1140, 1185, 1883, 2321, 2612
BssAI RCCGGY 1 cut(s) 2523
BssECI CCNNGG 5 cut(s) 1072, 1836, 2249, 2265, 2852
BssSI CACGAG 1 cut(s) 2457
BssT1I CCWWGG 3 cut(s) 2249, 2265, 2852
Bst2BI CACGAG 1 cut(s) 2457
Bst2UI CCWGG 3 cut(s) 1249, 1416, 1837
Bst4CI ACNGT 5 cut(s) 745, 1359, 1869, 2135, 2627
Bst6I CTCTTC 4 cut(s) 1171, 1186, 1281, 2444
BstAFI CTTAAG 2 cut(s) 14, 1793
BstAPI GCANNNNNTGC 6 cut(s) 966, 1411, 1753, 2009, 2036, 2045
BstC8I GCNNGC 2 cut(s) 1849, 2966
BstDSI CCRYGG 2 cut(s) 2249, 2852
BstEII GGTNACC 1 cut(s) 739
BstENI CCTNNNNNAGG 2 cut(s) 270, 1803
BstH2I RGCGCY 3 cut(s) 1400, 1983, 2557
BstHHI GCGC 3 cut(s) 1399, 1982, 2556
BstMAI GTCTC 9 cut(s) 107, 113, 628, 1149, 1283, 2182, 2307, 2643, 2980
BstMCI CGRYCG 2 cut(s) 1929, 2189
BstNI CCWGG 3 cut(s) 1249, 1416, 1837
BstNSI RCATGY 2 cut(s) 826, 1439
BstPI GGTNACC 1 cut(s) 739
BstSCI CCNGG 4 cut(s) 1072, 1247, 1414, 1835
BstSFI CTRYAG 8 cut(s) 1269, 1476, 1914, 1998, 2025, 2046, 2736, 3048
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 7 cut(s) 403, 730, 1442, 2210, 2947, 2974, 3059
BstYI RGATCY 7 cut(s) 403, 730, 1442, 2210, 2947, 2974, 3059
BstZI CGGCCG 1 cut(s) 1926
Bsu15I ATCGAT 1 cut(s) 2185
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 6 cut(s) 701, 1423, 1851, 1928, 2527, 3076
BsuTUI ATCGAT 1 cut(s) 2185
BtgI CCRYGG 2 cut(s) 2249, 2852
BtgZI GCGATG 2 cut(s) 2814, 2888
BtsI GCAGTG 4 cut(s) 2037, 2131, 2733, 3057
BtsIMutI CAGTG 5 cut(s) 201, 2037, 2131, 2733, 3057
BveI ACCTGC 2 cut(s) 263, 2183
Cac8I GCNNGC 2 cut(s) 1849, 2966
CaiI CAGNNNCTG 3 cut(s) 856, 1937, 2009
CciI TCATGA 1 cut(s) 1561
CciNI GCGGCCGC 1 cut(s) 1926
CfoI GCGC 3 cut(s) 1399, 1982, 2556
Cfr10I RCCGGY 1 cut(s) 2523
Cfr13I GGNCC 6 cut(s) 138, 700, 800, 1455, 2131, 2730
ClaI ATCGAT 1 cut(s) 2185
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 333, 2205, 2621
CviQI GTAC 3 cut(s) 333, 2205, 2621
DraIII CACNNNGTG 1 cut(s) 1753
EaeI YGGCCR 2 cut(s) 1849, 1926
EagI CGGCCG 1 cut(s) 1926
Eam1104I CTCTTC 4 cut(s) 1171, 1186, 1281, 2444
EarI CTCTTC 4 cut(s) 1171, 1186, 1281, 2444
Ecl136II GAGCTC 1 cut(s) 2833
EclXI CGGCCG 1 cut(s) 1926
Eco130I CCWWGG 3 cut(s) 2249, 2265, 2852
Eco24I GRGCYC 2 cut(s) 215, 2835
Eco31I GGTCTC 1 cut(s) 2980
Eco32I GATATC 3 cut(s) 177, 1711, 2260
Eco47I GGWCC 5 cut(s) 138, 800, 1455, 2131, 2730
Eco47III AGCGCT 1 cut(s) 1981
Eco52I CGGCCG 1 cut(s) 1926
Eco53kI GAGCTC 1 cut(s) 2833
Eco57I CTGAAG 6 cut(s) 288, 498, 1305, 1758, 2769, 3038
Eco88I CYCGRG 2 cut(s) 2580, 2725
Eco91I GGTNACC 1 cut(s) 739
EcoICRI GAGCTC 1 cut(s) 2833
EcoNI CCTNNNNNAGG 2 cut(s) 270, 1803
EcoO109I RGGNCCY 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 739
EcoRI GAATTC 1 cut(s) 2384
EcoRII CCWGG 3 cut(s) 1247, 1414, 1835
EcoRV GATATC 3 cut(s) 177, 1711, 2260
EcoT14I CCWWGG 3 cut(s) 2249, 2265, 2852
EcoT38I GRGCYC 2 cut(s) 215, 2835
ErhI CCWWGG 3 cut(s) 2249, 2265, 2852
Esp3I CGTCTC 1 cut(s) 113
FalI AAGNNNNNCTT 6 cut(s) 577, 609, 852, 884, 1432, 1464
FaqI GGGAC 6 cut(s) 124, 204, 1243, 2144, 2338, 2755
FblI GTMKAC 1 cut(s) 65
FriOI GRGCYC 2 cut(s) 215, 2835
FspBI CTAG 8 cut(s) 312, 330, 396, 704, 1152, 1767, 2351, 3057
GlaI GCGC 3 cut(s) 1398, 1981, 2555
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 3 cut(s) 1866, 2595, 2745
HaeII RGCGCY 3 cut(s) 1400, 1983, 2557
HaeIII GGCC 6 cut(s) 701, 1423, 1851, 1928, 2527, 3076
HapII CCGG 4 cut(s) 461, 473, 1074, 2524
HgaI GACGC 1 cut(s) 130
HhaI GCGC 3 cut(s) 1399, 1982, 2556
Hin6I GCGC 3 cut(s) 1397, 1980, 2554
HinP1I GCGC 3 cut(s) 1397, 1980, 2554
HincII GTYRAC 4 cut(s) 576, 637, 1641, 2056
HindII GTYRAC 4 cut(s) 576, 637, 1641, 2056
HpaII CCGG 4 cut(s) 461, 473, 1074, 2524
HphI GGTGA 4 cut(s) 988, 2234, 2254, 2381
HpyCH4III ACNGT 5 cut(s) 745, 1359, 1869, 2135, 2627
HpyCH4IV ACGT 1 cut(s) 724
HpySE526I ACGT 1 cut(s) 724
HspAI GCGC 3 cut(s) 1397, 1980, 2554
Kpn2I TCCGGA 1 cut(s) 460
LmnI GCTCC 7 cut(s) 27, 463, 1597, 2447, 2467, 2764, 2830
MaeI CTAG 8 cut(s) 312, 330, 396, 704, 1152, 1767, 2351, 3057
MaeII ACGT 1 cut(s) 724
MaeIII GTNAC 8 cut(s) 238, 720, 739, 1569, 1966, 2195, 2479, 2517
MfeI CAATTG 2 cut(s) 903, 2940
MflI RGATCY 7 cut(s) 403, 730, 1442, 2210, 2947, 2974, 3059
MhlI GDGCHC 4 cut(s) 215, 460, 2464, 2835
MlsI TGGCCA 1 cut(s) 1851
MluNI TGGCCA 1 cut(s) 1851
MlyI GAGTC 7 cut(s) 581, 862, 1157, 1714, 1979, 2184, 2409
MmeI TCCRAC 2 cut(s) 60, 2872
Mox20I TGGCCA 1 cut(s) 1851
MroI TCCGGA 1 cut(s) 460
MroXI GAANNNNTTC 2 cut(s) 592, 2490
MscI TGGCCA 1 cut(s) 1851
MseI TTAA 7 cut(s) 15, 432, 1253, 1497, 1794, 1887, 2340
MslI CAYNNNNRTG 2 cut(s) 2124, 2427
Msp20I TGGCCA 1 cut(s) 1851
MspA1I CMGCKG 6 cut(s) 620, 1364, 1925, 1937, 2006, 2051
MspCI CTTAAG 2 cut(s) 14, 1793
MspI CCGG 4 cut(s) 461, 473, 1074, 2524
MspR9I CCNGG 4 cut(s) 1074, 1249, 1416, 1837
MunI CAATTG 2 cut(s) 903, 2940
Mva1269I GAATGC 2 cut(s) 594, 1756
MvaI CCWGG 3 cut(s) 1249, 1416, 1837
NciI CCSGG 1 cut(s) 1074
NcoI CCATGG 2 cut(s) 2249, 2852
NlaIV GGNNCC 5 cut(s) 140, 405, 1000, 2132, 2760
NmeAIII GCCGAG 1 cut(s) 895
NmuCI GTSAC 1 cut(s) 720
NotI GCGGCCGC 1 cut(s) 1926
NspI RCATGY 2 cut(s) 826, 1439
PaeR7I CTCGAG 1 cut(s) 2725
PagI TCATGA 1 cut(s) 1561
PciI ACATGT 1 cut(s) 822
PctI GAATGC 2 cut(s) 594, 1756
PdmI GAANNNNTTC 2 cut(s) 592, 2490
PfeI GAWTC 8 cut(s) 50, 320, 370, 1280, 1346, 1537, 2245, 2372
PflFI GACNNNGTC 1 cut(s) 571
Ple19I CGATCG 1 cut(s) 2189
PleI GAGTC 7 cut(s) 580, 861, 1157, 1714, 1979, 2183, 2409
PpsI GAGTC 7 cut(s) 580, 861, 1157, 1714, 1979, 2183, 2409
PpuMI RGGWCCY 1 cut(s) 138
PscI ACATGT 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 2835
Psp5II RGGWCCY 1 cut(s) 138
Psp6I CCWGG 3 cut(s) 1247, 1414, 1835
PspEI GGTNACC 1 cut(s) 739
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 3 cut(s) 1247, 1414, 1835
PspN4I GGNNCC 5 cut(s) 140, 405, 1000, 2132, 2760
PspPI GGNCC 6 cut(s) 138, 700, 800, 1455, 2131, 2730
PspPPI RGGWCCY 1 cut(s) 138
PspXI VCTCGAGB 1 cut(s) 2725
PstI CTGCAG 7 cut(s) 1273, 1480, 1918, 2029, 2050, 2740, 3052
PstNI CAGNNNCTG 3 cut(s) 856, 1937, 2009
PsuI RGATCY 7 cut(s) 403, 730, 1442, 2210, 2947, 2974, 3059
PsyI GACNNNGTC 1 cut(s) 571
PvuI CGATCG 1 cut(s) 2189
PvuII CAGCTG 5 cut(s) 620, 1364, 1937, 2006, 2051
RsaI GTAC 3 cut(s) 334, 2206, 2622
RsaNI GTAC 3 cut(s) 333, 2205, 2621
RseI CAYNNNNRTG 2 cut(s) 2124, 2427
SacI GAGCTC 1 cut(s) 2835
SaqAI TTAA 7 cut(s) 15, 432, 1253, 1497, 1794, 1887, 2340
Sau96I GGNCC 6 cut(s) 138, 700, 800, 1455, 2131, 2730
ScaI AGTACT 1 cut(s) 334
SchI GAGTC 7 cut(s) 581, 862, 1157, 1714, 1979, 2184, 2409
ScrFI CCNGG 4 cut(s) 1074, 1249, 1416, 1837
SduI GDGCHC 4 cut(s) 215, 460, 2464, 2835
SfcI CTRYAG 8 cut(s) 1269, 1476, 1914, 1998, 2025, 2046, 2736, 3048
Sfr274I CTCGAG 1 cut(s) 2725
SinI GGWCC 5 cut(s) 138, 800, 1455, 2131, 2730
SlaI CTCGAG 1 cut(s) 2725
SmiMI CAYNNNNRTG 2 cut(s) 2124, 2427
SmlI CTYRAG 5 cut(s) 14, 133, 1793, 2557, 2725
SmoI CTYRAG 5 cut(s) 14, 133, 1793, 2557, 2725
SsiI CCGC 2 cut(s) 1925, 1929
SspI AATATT 2 cut(s) 564, 1993
SspMI CTAG 8 cut(s) 312, 330, 396, 704, 1152, 1767, 2351, 3057
SstI GAGCTC 1 cut(s) 2835
StyD4I CCNGG 4 cut(s) 1072, 1247, 1414, 1835
StyI CCWWGG 3 cut(s) 2249, 2265, 2852
TaaI ACNGT 5 cut(s) 745, 1359, 1869, 2135, 2627
TaiI ACGT 1 cut(s) 727
TaqI TCGA 3 cut(s) 1718, 2185, 2726
TaqII GACCGA 1 cut(s) 1472
TatI WGTACW 3 cut(s) 332, 2204, 2620
TauI GCSGC 2 cut(s) 1928, 1931
TfiI GAWTC 8 cut(s) 50, 320, 370, 1280, 1346, 1537, 2245, 2372
Tru1I TTAA 7 cut(s) 15, 432, 1253, 1497, 1794, 1887, 2340
Tru9I TTAA 7 cut(s) 15, 432, 1253, 1497, 1794, 1887, 2340
TscAI CASTG 5 cut(s) 201, 2037, 2131, 2740, 3057
TseFI GTSAC 1 cut(s) 720
Tsp45I GTSAC 1 cut(s) 720
TspGWI ACGGA 3 cut(s) 584, 1625, 2342
TspRI CASTG 5 cut(s) 201, 2037, 2131, 2740, 3057
Tth111I GACNNNGTC 1 cut(s) 571
Vha464I CTTAAG 2 cut(s) 14, 1793
VpaK11BI GGWCC 5 cut(s) 138, 800, 1455, 2131, 2730
XagI CCTNNNNNAGG 2 cut(s) 270, 1803
XapI RAATTY 7 cut(s) 676, 754, 1315, 1543, 1600, 2384, 2486
XbaI TCTAGA 2 cut(s) 1151, 2350
XceI RCATGY 2 cut(s) 826, 1439
XhoI CTCGAG 1 cut(s) 2725
XmiI GTMKAC 1 cut(s) 65
XmnI GAANNNNTTC 2 cut(s) 592, 2490
XspI CTAG 8 cut(s) 312, 330, 396, 704, 1152, 1767, 2351, 3057
ZrmI AGTACT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.