Rroxscaffold_1G00021670

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000519
Physical Location & Seq
Forward (+)
26632931 .. 26650985
18055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021670.1

Sequence Viewer

Length: 567 bp
ATGCAACATGAGAATACATTTCGCATCAAGACGTACCAAAAAAAGGATAGCCGTGCAAGTGTTATTGACAACACCGCCACACGGTGGGTAGGTTGTTACACGGGGTTTGCATGTGCTTCGACTTATCCCGTCACGTGGCTAGAAGATAGTGGCCTTGTAGTAATGCGATGGTTAGTCGCTGCAGCAATCCCCAAGCTTAATGTGGATAGTGCTTTTCTACCACATGAATCGCATGGTGGAGTTGGTGGTGTGCTAAGGAGCTCGAATGGAGGTTTTCAATCAACTTTTATGCAACCAGAGCAGCATGTTAATTCAGTTTATCAGGACATTCAAAGTGTAGCAAATGGTATGCGGGGTGTCCAGATCACTTTTGCTCCCGTGTCTTGTAATAAAGTGGCACATAGATTGGCTAGTTTGGCTTTGGAAAATGGTCGGTGTGAAACTTGGCAGGGCTTAAATCCCAACCTACACGACGACAGCTTTGATTTGTCTCTGTCTTCGGCCCCCGACGAAAACGACAACCTAACTGACACCACTGCCCGTTGGACTGTCACTGCCCCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

188

Amino Acids

20.63

Weight (kDa)

5.81

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 84
AciI CCGC 2 cut(s) 75, 352
AcvI CACGTG 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 4 cut(s) 43, 81, 84, 135
AgsI TTSAA 2 cut(s) 278, 332
AluBI AGCT 3 cut(s) 196, 261, 480
AluI AGCT 3 cut(s) 196, 261, 480
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 495
AoxI GGCC 2 cut(s) 151, 501
ApeKI GCWGC 3 cut(s) 179, 182, 301
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
AspS9I GGNCC 1 cut(s) 502
BanII GRGCYC 1 cut(s) 263
BbrPI CACGTG 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 166, 194, 313
BccI CCATC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 36
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 2 cut(s) 140, 411
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 3 cut(s) 180, 183, 302
BlsI GCNGC 3 cut(s) 181, 184, 303
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 1 cut(s) 504
BmsI GCATC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 81, 84, 135
BseLI CCNNNNNNNGG 4 cut(s) 43, 81, 84, 135
BseXI GCAGC 3 cut(s) 166, 194, 313
BshFI GGCC 2 cut(s) 153, 503
BsiHKAI GWGCWC 1 cut(s) 263
BslI CCNNNNNNNGG 4 cut(s) 43, 81, 84, 135
BsmAI GTCTC 1 cut(s) 495
BsnI GGCC 2 cut(s) 153, 503
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 1 cut(s) 363
BspACI CCGC 2 cut(s) 75, 352
BspANI GGCC 2 cut(s) 153, 503
BspLI GGNNCC 1 cut(s) 504
BspMAI CTGCAG 1 cut(s) 184
BssMI GATC 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 84, 550
BstBAI YACGTR 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 254
BstKTI GATC 1 cut(s) 366
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 1 cut(s) 363
BstMWI GCNNNNNNNGC 2 cut(s) 298, 416
BstNSI RCATGY 2 cut(s) 114, 308
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 3 cut(s) 166, 194, 313
BstV2I GAAGAC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 153, 503
BtgZI GCGATG 1 cut(s) 181
BtsI GCAGTG 2 cut(s) 534, 552
BtsIMutI CAGTG 2 cut(s) 534, 552
Cfr13I GGNCC 1 cut(s) 502
Csp6I GTAC 1 cut(s) 34
CviAII CATG 5 cut(s) 8, 111, 224, 233, 305
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 254
DpnI GATC 1 cut(s) 365
DpnII GATC 1 cut(s) 363
DraIII CACNNNGTG 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 261
Eco72I CACGTG 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 263
FaeI CATG 5 cut(s) 11, 114, 227, 236, 308
FaiI YATR 8 cut(s) 9, 112, 225, 234, 290, 306, 350, 402
FatI CATG 5 cut(s) 7, 110, 223, 232, 304
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 180, 183, 302
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 3 cut(s) 180, 183, 302
FspBI CTAG 2 cut(s) 140, 411
GluI GCNGC 3 cut(s) 180, 183, 302
HaeIII GGCC 2 cut(s) 153, 503
Hin1II CATG 5 cut(s) 11, 114, 227, 236, 308
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 1 cut(s) 227
Hpy188III TCNNGA 3 cut(s) 28, 323, 361
Hpy99I CGWCG 2 cut(s) 476, 512
HpyCH4III ACNGT 2 cut(s) 84, 550
HpyCH4IV ACGT 2 cut(s) 32, 134
HpyCH4V TGCA 5 cut(s) 4, 56, 110, 182, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 416
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 2 cut(s) 32, 134
Hsp92II CATG 5 cut(s) 11, 114, 227, 236, 308
Kzo9I GATC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 258, 379
LpnPI CCDG 4 cut(s) 308, 309, 374, 434
Lsp1109I GCAGC 3 cut(s) 166, 194, 313
LweI GCATC 1 cut(s) 33
MaeI CTAG 2 cut(s) 140, 411
MaeII ACGT 2 cut(s) 32, 134
MaeIII GTNAC 3 cut(s) 95, 130, 550
MalI GATC 1 cut(s) 365
MboI GATC 1 cut(s) 363
MboII GAAGA 2 cut(s) 155, 489
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 2 cut(s) 310, 562
MmeI TCCRAC 1 cut(s) 524
MnlI CCTC 1 cut(s) 263
MseI TTAA 3 cut(s) 198, 309, 455
MwoI GCNNNNNNNGC 2 cut(s) 298, 416
NdeII GATC 1 cut(s) 363
NlaIII CATG 5 cut(s) 11, 114, 227, 236, 308
NlaIV GGNNCC 1 cut(s) 504
NmuCI GTSAC 2 cut(s) 130, 550
NspI RCATGY 2 cut(s) 114, 308
PfeI GAWTC 1 cut(s) 227
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 3 cut(s) 181, 184, 303
PmaCI CACGTG 1 cut(s) 135
PmlI CACGTG 1 cut(s) 135
Ppu21I YACGTR 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 263
PspCI CACGTG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 1 cut(s) 502
PstI CTGCAG 1 cut(s) 184
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SacI GAGCTC 1 cut(s) 263
SaqAI TTAA 3 cut(s) 198, 309, 455
SatI GCNGC 3 cut(s) 180, 183, 302
Sau3AI GATC 1 cut(s) 363
Sau96I GGNCC 1 cut(s) 502
SduI GDGCHC 1 cut(s) 263
SetI ASST 9 cut(s) 35, 94, 137, 198, 263, 274, 468, 482, 525
SfaNI GCATC 1 cut(s) 33
SfcI CTRYAG 1 cut(s) 180
Sse9I AATT 2 cut(s) 310, 562
SsiI CCGC 2 cut(s) 75, 352
SspMI CTAG 2 cut(s) 140, 411
SstI GAGCTC 1 cut(s) 263
TaaI ACNGT 2 cut(s) 84, 550
TaiI ACGT 2 cut(s) 35, 137
TaqI TCGA 2 cut(s) 119, 263
TasI AATT 2 cut(s) 310, 562
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 3 cut(s) 198, 309, 455
Tru9I TTAA 3 cut(s) 198, 309, 455
TscAI CASTG 2 cut(s) 541, 559
TseFI GTSAC 2 cut(s) 130, 550
TseI GCWGC 3 cut(s) 179, 182, 301
Tsp45I GTSAC 2 cut(s) 130, 550
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 2 cut(s) 541, 559
Van91I CCANNNNNTGG 1 cut(s) 84
XceI RCATGY 2 cut(s) 114, 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XspI CTAG 2 cut(s) 140, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.