Rroxscaffold_2G00111250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000519
Physical Location & Seq
Forward (+)
35810925 .. 35814613
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111250.1

Sequence Viewer

Length: 471 bp
ATGCCTTCAGCCACGTCGATTTTGCTTGTTGGAGCTTCGTTTCAAGTGGGGCTGTGGCTGGTGCAACAAGGGATCGATTGCCCTTTTTGGTGGTTTGTCCCTTTGATTGCCCTCTTTGGTGGATGCGGCGGCGAAGCAATAGATCTAGGATTCGGCGAGAAGCAGATCAACAATGAAAAGGACGAGGAAGAGCTTGAGGTCGTCGCTCGCTCCACCGATGAAGACACCGTTGAGGACAACTCCCGCCGATCCGATGACGAGGCCGTGCCGACCGAGAACAACAACGACTTTGAAGAAGAGGATCATGAATTGGATGAGTTGGGTACTCTTGTGGATGACATTCTGCACCAGCTATTAAGCTTACCACAGGTTCGAATTCAGCATGCCAAGCGAACCTGCAATGCTGTGGCGCACAAGCTTGCTGCCTATGCTTTTGATTCTGTTCTGTATAATGTGGTCTGGACTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.43

Weight (kDa)

4.15

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 404
AciI CCGC 3 cut(s) 126, 129, 244
AclWI GGATC 3 cut(s) 80, 243, 309
AcsI RAATTY 1 cut(s) 375
AfaI GTAC 1 cut(s) 325
AgsI TTSAA 2 cut(s) 44, 293
AjiI CACGTC 1 cut(s) 15
AluBI AGCT 5 cut(s) 35, 193, 352, 360, 418
AluI AGCT 5 cut(s) 35, 193, 352, 360, 418
AlwI GGATC 3 cut(s) 80, 243, 309
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 1 cut(s) 375
AspLEI GCGC 1 cut(s) 412
AsuII TTCGAA 1 cut(s) 373
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 409
BceAI ACGGC 1 cut(s) 248
BfaI CTAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 404
BglII AGATCT 1 cut(s) 142
BisI GCNGC 3 cut(s) 127, 130, 423
BlsI GCNGC 3 cut(s) 128, 131, 424
BmgBI CACGTC 1 cut(s) 15
BmsI GCATC 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 224, 256
Bpu14I TTCGAA 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 75
BseGI GGATG 3 cut(s) 128, 319, 340
BseMI GCAATG 1 cut(s) 406
BseXI GCAGC 1 cut(s) 409
BsgI GTGCAG 1 cut(s) 329
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 263
BshVI ATCGAT 1 cut(s) 75
BsiEI CGRYCG 1 cut(s) 273
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 373
Bsp143I GATC 5 cut(s) 72, 142, 165, 248, 301
BspACI CCGC 3 cut(s) 126, 129, 244
BspANI GGCC 1 cut(s) 263
BspDI ATCGAT 1 cut(s) 75
BspHI TCATGA 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 404
BspPI GGATC 3 cut(s) 80, 243, 309
BspQI GCTCTTC 1 cut(s) 183
BspT104I TTCGAA 1 cut(s) 373
BsrDI GCAATG 1 cut(s) 406
BssMI GATC 5 cut(s) 72, 142, 165, 248, 301
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 183, 291
BstBI TTCGAA 1 cut(s) 373
BstC8I GCNNGC 3 cut(s) 208, 384, 420
BstF5I GGATG 3 cut(s) 128, 319, 340
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 5 cut(s) 75, 145, 168, 251, 304
BstMBI GATC 5 cut(s) 72, 142, 165, 248, 301
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 2 cut(s) 388, 428
BstNSI RCATGY 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 409
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 1 cut(s) 263
BsuTUI ATCGAT 1 cut(s) 75
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 3 cut(s) 128, 319, 340
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 3 cut(s) 208, 384, 420
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 412
ClaI ATCGAT 1 cut(s) 75
Csp6I GTAC 1 cut(s) 324
CviAII CATG 2 cut(s) 305, 383
CviJI RGCY 9 cut(s) 11, 35, 52, 58, 193, 263, 352, 360, 418
CviKI_1 RGCY 9 cut(s) 11, 35, 52, 58, 193, 263, 352, 360, 418
CviQI GTAC 1 cut(s) 324
DpnI GATC 5 cut(s) 74, 144, 167, 250, 303
DpnII GATC 5 cut(s) 72, 142, 165, 248, 301
Eam1104I CTCTTC 2 cut(s) 183, 291
EarI CTCTTC 2 cut(s) 183, 291
EcoRI GAATTC 1 cut(s) 375
FaeI CATG 2 cut(s) 308, 386
FaiI YATR 4 cut(s) 306, 384, 429, 450
FaqI GGGAC 1 cut(s) 83
FatI CATG 2 cut(s) 304, 382
FauI CCCGC 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 127, 130, 423
FokI GGATG 3 cut(s) 135, 326, 347
Fsp4HI GCNGC 3 cut(s) 127, 130, 423
FspBI CTAG 1 cut(s) 146
GlaI GCGC 1 cut(s) 411
GluI GCNGC 3 cut(s) 127, 130, 423
HaeIII GGCC 1 cut(s) 263
HhaI GCGC 1 cut(s) 412
Hin1II CATG 2 cut(s) 308, 386
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HindIII AAGCTT 2 cut(s) 358, 416
HinfI GANTC 3 cut(s) 150, 437, 463
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 2 cut(s) 305, 460
Hpy99I CGWCG 2 cut(s) 19, 206
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 3 cut(s) 64, 346, 399
HpyF10VI GCNNNNNNNGC 2 cut(s) 388, 428
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 2 cut(s) 308, 386
HspAI GCGC 1 cut(s) 410
Kzo9I GATC 5 cut(s) 72, 142, 165, 248, 301
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 32, 215
LpnPI CCDG 5 cut(s) 44, 353, 362, 409, 445
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 14
MalI GATC 5 cut(s) 74, 144, 167, 250, 303
MboI GATC 5 cut(s) 72, 142, 165, 248, 301
MboII GAAGA 4 cut(s) 200, 233, 305, 308
MflI RGATCY 1 cut(s) 142
MluCI AATT 2 cut(s) 308, 375
MlyI GAGTC 1 cut(s) 457
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 6 cut(s) 122, 178, 190, 226, 253, 292
MseI TTAA 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 388, 428
NdeII GATC 5 cut(s) 72, 142, 165, 248, 301
NlaIII CATG 2 cut(s) 308, 386
NspI RCATGY 1 cut(s) 386
NspV TTCGAA 1 cut(s) 373
PaeI GCATGC 1 cut(s) 386
PagI TCATGA 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 183
PfeI GAWTC 2 cut(s) 150, 437
PkrI GCNGC 3 cut(s) 128, 131, 424
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 3 cut(s) 127, 130, 423
Sau3AI GATC 5 cut(s) 72, 142, 165, 248, 301
SchI GAGTC 1 cut(s) 457
SetI ASST 9 cut(s) 17, 37, 195, 201, 354, 362, 372, 398, 420
SfaNI GCATC 1 cut(s) 113
SfuI TTCGAA 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SphI GCATGC 1 cut(s) 386
Sse9I AATT 2 cut(s) 308, 375
SsiI CCGC 3 cut(s) 126, 129, 244
SspMI CTAG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 17
TaqI TCGA 3 cut(s) 17, 75, 373
TaqII GACCGA 1 cut(s) 287
TasI AATT 2 cut(s) 308, 375
TauI GCSGC 2 cut(s) 129, 132
TfiI GAWTC 2 cut(s) 150, 437
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TseI GCWGC 1 cut(s) 422
TspDTI ATGAA 3 cut(s) 189, 234, 321
XapI RAATTY 1 cut(s) 375
XceI RCATGY 1 cut(s) 386
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.