Rmu_sc0007025.1_g000012

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007025.1
OG0000519
Physical Location & Seq
Reverse (-)
30559 .. 30933
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007025.1_g000012.1.cds

Sequence Viewer

Length: 375 bp
atggagcagcatacgggctctgcaaagcaagtagaactgctagctattagacggggaacagattttgttaaggaactagatctgcaacatgtcactattgattgtgactatttagatgcggtgcagctaatccttaataaggaccatgaattggatgagctgggagctctggttgaggattgcttggtaattatggccaacatgccagaagtacgtatccaacatgctgggagaactagaaacaatgttgcacacaagcttgcggcatttgcttttgagtgtgatggttgtaatgaggtttggcatcagcgacctcctagcttgatttttgatgtactgcaatatgatttcaccatattgcttaatctttgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

124

Amino Acids

14.13

Weight (kDa)

4.81

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 151
AciI CCGC 2 cut(s) 119, 263
AcoI YGGCCR 1 cut(s) 195
AfaI GTAC 2 cut(s) 213, 336
AfiI CCNNNNNNNGG 2 cut(s) 139, 151
AflIII ACRYGT 1 cut(s) 88
AluBI AGCT 6 cut(s) 44, 127, 160, 167, 259, 321
AluI AGCT 6 cut(s) 44, 127, 160, 167, 259, 321
Alw21I GWGCWC 1 cut(s) 169
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 7, 124
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 343
AsuNHI GCTAGC 1 cut(s) 40
AvaII GGWCC 1 cut(s) 142
BalI TGGCCA 1 cut(s) 197
BanII GRGCYC 2 cut(s) 20, 169
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 19, 136
BccI CCATC 1 cut(s) 278
BciVI GTATCC 1 cut(s) 227
BfaI CTAG 4 cut(s) 41, 77, 237, 318
BfuI GTATCC 1 cut(s) 227
BglII AGATCT 1 cut(s) 79
BisI GCNGC 3 cut(s) 8, 125, 264
BlsI GCNGC 3 cut(s) 9, 126, 265
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmsI GCATC 2 cut(s) 106, 313
BmtI GCTAGC 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 151
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 2 cut(s) 139, 151
BseXI GCAGC 2 cut(s) 19, 136
BseYI CCCAGC 2 cut(s) 160, 227
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 139, 151
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 20, 169
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 2 cut(s) 119, 263
BspANI GGCC 1 cut(s) 197
BspOI GCTAGC 1 cut(s) 44
BssMI GATC 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 42, 261
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNSI RCATGY 3 cut(s) 92, 205, 227
BstSNI TACGTA 1 cut(s) 215
BstV1I GCAGC 2 cut(s) 19, 136
BstX2I RGATCY 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 79
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 42, 261
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 2 cut(s) 212, 335
CviAII CATG 4 cut(s) 89, 146, 202, 224
CviJI RGCY 8 cut(s) 18, 44, 127, 160, 167, 197, 259, 321
CviKI_1 RGCY 8 cut(s) 18, 44, 127, 160, 167, 197, 259, 321
CviQI GTAC 2 cut(s) 212, 335
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 167
Eco105I TACGTA 1 cut(s) 215
Eco24I GRGCYC 2 cut(s) 20, 169
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 167
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoT38I GRGCYC 2 cut(s) 20, 169
FaeI CATG 4 cut(s) 92, 149, 205, 227
FaiI YATR 8 cut(s) 12, 90, 147, 194, 203, 225, 345, 356
FatI CATG 4 cut(s) 88, 145, 201, 223
Fnu4HI GCNGC 3 cut(s) 8, 125, 264
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 2 cut(s) 20, 169
Fsp4HI GCNGC 3 cut(s) 8, 125, 264
FspBI CTAG 4 cut(s) 41, 77, 237, 318
GluI GCNGC 3 cut(s) 8, 125, 264
GsaI CCCAGC 2 cut(s) 164, 231
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 4 cut(s) 92, 149, 205, 227
HindIII AAGCTT 1 cut(s) 257
HphI GGTGA 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 5 cut(s) 23, 85, 124, 251, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 4 cut(s) 92, 149, 205, 227
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 2 cut(s) 4, 164
LpnPI CCDG 4 cut(s) 146, 155, 213, 219
Lsp1109I GCAGC 2 cut(s) 19, 136
LweI GCATC 2 cut(s) 106, 313
MaeI CTAG 4 cut(s) 41, 77, 237, 318
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 2 cut(s) 91, 104
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 2 cut(s) 20, 169
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 2 cut(s) 149, 189
MluNI TGGCCA 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 3 cut(s) 169, 289, 324
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 4 cut(s) 69, 135, 363, 373
Msp20I TGGCCA 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 1 cut(s) 79
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 4 cut(s) 92, 149, 205, 227
NmuCI GTSAC 2 cut(s) 91, 104
NspI RCATGY 3 cut(s) 92, 205, 227
PciI ACATGT 1 cut(s) 88
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 3 cut(s) 9, 126, 265
Ppu21I YACGTR 1 cut(s) 215
PscI ACATGT 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 169
PspFI CCCAGC 2 cut(s) 160, 227
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 2 cut(s) 213, 336
RsaNI GTAC 2 cut(s) 212, 335
SacI GAGCTC 1 cut(s) 169
SaqAI TTAA 4 cut(s) 69, 135, 363, 373
SatI GCNGC 3 cut(s) 8, 125, 264
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 142
SduI GDGCHC 2 cut(s) 20, 169
SetI ASST 9 cut(s) 46, 129, 162, 169, 217, 261, 300, 316, 323
SfaNI GCATC 2 cut(s) 106, 313
SinI GGWCC 1 cut(s) 142
SnaBI TACGTA 1 cut(s) 215
Sse9I AATT 2 cut(s) 149, 189
SsiI CCGC 2 cut(s) 119, 263
SspMI CTAG 4 cut(s) 41, 77, 237, 318
SstI GAGCTC 1 cut(s) 169
TaiI ACGT 1 cut(s) 217
TasI AATT 2 cut(s) 149, 189
TatI WGTACW 1 cut(s) 334
TauI GCSGC 1 cut(s) 266
Tru1I TTAA 4 cut(s) 69, 135, 363, 373
Tru9I TTAA 4 cut(s) 69, 135, 363, 373
TseFI GTSAC 2 cut(s) 91, 104
TseI GCWGC 2 cut(s) 7, 124
Tsp45I GTSAC 2 cut(s) 91, 104
TspDTI ATGAA 1 cut(s) 162
Van91I CCANNNNNTGG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 142
XagI CCTNNNNNAGG 1 cut(s) 137
XceI RCATGY 3 cut(s) 92, 205, 227
XspI CTAG 4 cut(s) 41, 77, 237, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.