Rh3AG236100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000519
Physical Location & Seq
Forward (+)
24406555 .. 24407663
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG236100.1

Sequence Viewer

Length: 615 bp
ATGCAAAGGCAGTGCTGGCAACCTGAGAAGAACGATACACCCAAGTTAAATGTTGATGGAGCTTTTGTGCCTCACATGACAAGAGGGGGAACATGGGGTGTTCTTCGCAACTCACAGGGACACTTCATAGCAACGTTTGCCGATGCTATGCCATATACAAGTTCGGCAAAACATGCTGAACTCCTAGCAATCAGAAGAGGATTGGACCTTGTAAAAGAATTAGACCTACAACATGTCACAATTGAAAGTGATTGTCTTGAAACTGTGCAGCTGATTCTCAGCAAGGATCATGAATTGGACGAGCTAGGTGCAGTGGTTGATGATATGCTGACTACCATGAGGTGTATCCCACATGTTCGACTTCAACATGGAAAGAGAACCTGCAACGGTGTTGCGCATAGGCTAGCTGCTTCAGCTTTTGATTCTAATCTTTGTAATAGGGCTCTAAAGATGTCCTCAATCCACCACAACAACCACCATCACATACGTGAGGACAAAGACATAGGTCGTTGTGGTTGTACTGCTGCATGCTTGTCCCATTTTGTTGTGTTATTTTCTCTCGATTGGCCTCAGGTTGTTTTGCTGCCCTCTGGTTTGAAGGAAGAAGGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

204

Amino Acids

22.75

Weight (kDa)

6.52

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 17 - 139 9.8e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 389
AclI AACGTT 1 cut(s) 134
AclWI GGATC 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 1 cut(s) 520
AflIII ACRYGT 2 cut(s) 232, 352
AgsI TTSAA 4 cut(s) 245, 260, 365, 598
AleI CACNNNNGTG 1 cut(s) 486
AluBI AGCT 5 cut(s) 62, 271, 304, 407, 416
AluI AGCT 5 cut(s) 62, 271, 304, 407, 416
AlwI GGATC 1 cut(s) 294
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 4 cut(s) 268, 407, 524, 583
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 1 cut(s) 205
AsuNHI GCTAGC 1 cut(s) 403
AvaII GGWCC 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 570
BanII GRGCYC 1 cut(s) 445
BbvI GCAGC 4 cut(s) 280, 394, 511, 570
BccI CCATC 2 cut(s) 50, 486
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciVI GTATCC 1 cut(s) 356
BfaI CTAG 3 cut(s) 185, 305, 404
BfuAI ACCTGC 1 cut(s) 389
BfuI GTATCC 1 cut(s) 356
BisI GCNGC 4 cut(s) 269, 408, 525, 584
BlsI GCNGC 4 cut(s) 270, 409, 526, 585
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmsI GCATC 1 cut(s) 133
BmtI GCTAGC 1 cut(s) 407
BoxI GACNNNNGTC 1 cut(s) 504
BsaAI YACGTR 1 cut(s) 488
BsaBI GATNNNNATC 1 cut(s) 426
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse21I CCTNAGG 1 cut(s) 570
Bse8I GATNNNNATC 1 cut(s) 426
BseJI GATNNNNATC 1 cut(s) 426
BseMII CTCAG 3 cut(s) 15, 292, 584
BseXI GCAGC 4 cut(s) 280, 394, 511, 570
BsgI GTGCAG 2 cut(s) 287, 330
BshFI GGCC 1 cut(s) 568
BslFI GGGAC 2 cut(s) 132, 520
BsmFI GGGAC 2 cut(s) 132, 520
BsnI GGCC 1 cut(s) 568
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 1 cut(s) 286
BspANI GGCC 1 cut(s) 568
BspCNI CTCAG 3 cut(s) 16, 291, 583
BspHI TCATGA 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 389
BspOI GCTAGC 1 cut(s) 407
BspPI GGATC 1 cut(s) 294
BssMI GATC 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 265, 389
Bst6I CTCTTC 1 cut(s) 190
BstAPI GCANNNNNTGC 2 cut(s) 137, 173
BstBAI YACGTR 1 cut(s) 488
BstC8I GCNNGC 3 cut(s) 17, 405, 529
BstDEI CTNAG 3 cut(s) 24, 278, 570
BstHHI GCGC 1 cut(s) 397
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 4 cut(s) 16, 137, 173, 413
BstNSI RCATGY 4 cut(s) 176, 236, 356, 531
BstPAI GACNNNNGTC 1 cut(s) 504
BstV1I GCAGC 4 cut(s) 280, 394, 511, 570
Bsu36I CCTNAGG 1 cut(s) 570
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 568
BtsI GCAGTG 2 cut(s) 17, 318
BtsIMutI CAGTG 2 cut(s) 17, 318
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 3 cut(s) 17, 405, 529
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 519
CviAII CATG 9 cut(s) 76, 93, 173, 233, 290, 337, 353, 368, 528
CviJI RGCY 9 cut(s) 62, 271, 304, 403, 407, 416, 443, 568, 611
CviKI_1 RGCY 9 cut(s) 62, 271, 304, 403, 407, 416, 443, 568, 611
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 3 cut(s) 24, 278, 570
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 396
Eco81I CCTNAGG 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 445
FaeI CATG 9 cut(s) 79, 96, 176, 236, 293, 340, 356, 371, 531
FaqI GGGAC 2 cut(s) 132, 520
FatI CATG 9 cut(s) 75, 92, 172, 232, 289, 336, 352, 367, 527
Fnu4HI GCNGC 4 cut(s) 269, 408, 525, 584
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 4 cut(s) 269, 408, 525, 584
FspBI CTAG 3 cut(s) 185, 305, 404
FspI TGCGCA 1 cut(s) 396
GlaI GCGC 1 cut(s) 396
GluI GCNGC 4 cut(s) 269, 408, 525, 584
HaeIII GGCC 1 cut(s) 568
HhaI GCGC 1 cut(s) 397
Hin1II CATG 9 cut(s) 79, 96, 176, 236, 293, 340, 356, 371, 531
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HinfI GANTC 2 cut(s) 274, 422
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 3 cut(s) 257, 290, 560
HpyAV CCTTC 2 cut(s) 592, 599
HpyCH4III ACNGT 2 cut(s) 265, 389
HpyCH4IV ACGT 2 cut(s) 134, 487
HpyCH4V TGCA 5 cut(s) 4, 268, 311, 384, 527
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 137, 173, 413
HpyF3I CTNAG 3 cut(s) 24, 278, 570
HpySE526I ACGT 2 cut(s) 134, 487
Hsp92II CATG 9 cut(s) 79, 96, 176, 236, 293, 340, 356, 371, 531
HspAI GCGC 1 cut(s) 395
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 5 cut(s) 36, 101, 394, 557, 576
Lsp1109I GCAGC 4 cut(s) 280, 394, 511, 570
LweI GCATC 1 cut(s) 133
MaeI CTAG 3 cut(s) 185, 305, 404
MaeII ACGT 2 cut(s) 134, 487
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 4 cut(s) 40, 95, 207, 614
MfeI CAATTG 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 3 cut(s) 218, 240, 293
MnlI CCTC 8 cut(s) 77, 81, 191, 333, 466, 484, 579, 598
MseI TTAA 2 cut(s) 47, 613
MslI CAYNNNNRTG 1 cut(s) 486
MspA1I CMGCKG 1 cut(s) 271
MunI CAATTG 1 cut(s) 240
MwoI GCNNNNNNNGC 4 cut(s) 16, 137, 173, 413
NdeII GATC 1 cut(s) 286
NheI GCTAGC 1 cut(s) 403
NlaIII CATG 9 cut(s) 79, 96, 176, 236, 293, 340, 356, 371, 531
NmuCI GTSAC 1 cut(s) 235
NsbI TGCGCA 1 cut(s) 396
NspI RCATGY 4 cut(s) 176, 236, 356, 531
OliI CACNNNNGTG 1 cut(s) 486
PaeI GCATGC 1 cut(s) 531
PagI TCATGA 1 cut(s) 289
PciI ACATGT 2 cut(s) 232, 352
PfeI GAWTC 2 cut(s) 274, 422
PkrI GCNGC 4 cut(s) 270, 409, 526, 585
Ppu21I YACGTR 1 cut(s) 488
PscI ACATGT 2 cut(s) 232, 352
PshAI GACNNNNGTC 1 cut(s) 504
Psp1406I AACGTT 1 cut(s) 134
PspPI GGNCC 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 2 cut(s) 47, 613
SatI GCNGC 4 cut(s) 269, 408, 525, 584
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 445
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 486
SphI GCATGC 1 cut(s) 531
Sse9I AATT 3 cut(s) 218, 240, 293
SspMI CTAG 3 cut(s) 185, 305, 404
TaaI ACNGT 2 cut(s) 265, 389
TaiI ACGT 2 cut(s) 137, 490
TaqI TCGA 2 cut(s) 358, 561
TasI AATT 3 cut(s) 218, 240, 293
TatI WGTACW 1 cut(s) 518
TfiI GAWTC 2 cut(s) 274, 422
Tru1I TTAA 2 cut(s) 47, 613
Tru9I TTAA 2 cut(s) 47, 613
TscAI CASTG 2 cut(s) 17, 318
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 4 cut(s) 268, 407, 524, 583
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 115, 306
TspRI CASTG 2 cut(s) 17, 318
VpaK11BI GGWCC 1 cut(s) 205
XceI RCATGY 4 cut(s) 176, 236, 356, 531
XspI CTAG 3 cut(s) 185, 305, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.