RchiOBHm_Chr2g0100641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000519
Physical Location & Seq
Reverse (-)
12532479 .. 12534847
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47527

Sequence Viewer

Length: 147 bp
ATGAAGAAGGATCCAAGTTCATCGATGTTGCATGCTGTGATGAAGAATGTCGCCAAACTGAGTTATGAGCTAAAGGCGACATATAAGCTCTGGATGCTTTTCAGTTGCGTAGTCATCAGCGACCGTTACATCTTGATCATTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

48

Amino Acids

5.57

Weight (kDa)

9.52

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 5, 18
AluBI AGCT 2 cut(s) 70, 88
AluI AGCT 2 cut(s) 70, 88
AlwI GGATC 2 cut(s) 5, 18
BamHI GGATCC 1 cut(s) 10
BclI TGATCA 1 cut(s) 135
BfaI CTAG 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 23
BseGI GGATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 124
BshVI ATCGAT 1 cut(s) 23
BsiEI CGRYCG 1 cut(s) 124
Bsp143I GATC 2 cut(s) 10, 135
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 2 cut(s) 5, 18
BssMI GATC 2 cut(s) 10, 135
Bst4CI ACNGT 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 99
BstKTI GATC 2 cut(s) 13, 138
BstMBI GATC 2 cut(s) 10, 135
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
Bsu15I ATCGAT 1 cut(s) 23
BsuTUI ATCGAT 1 cut(s) 23
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 33
ClaI ATCGAT 1 cut(s) 23
CviAII CATG 1 cut(s) 32
CviJI RGCY 2 cut(s) 70, 88
CviKI_1 RGCY 2 cut(s) 70, 88
DdeI CTNAG 1 cut(s) 59
DpnI GATC 2 cut(s) 12, 137
DpnII GATC 2 cut(s) 10, 135
FaeI CATG 1 cut(s) 35
FaiI YATR 4 cut(s) 33, 66, 82, 84
FatI CATG 1 cut(s) 31
FbaI TGATCA 1 cut(s) 135
FokI GGATG 1 cut(s) 106
FspBI CTAG 1 cut(s) 145
FspEI CC 5 cut(s) 27, 59, 67, 76, 137
Hin1II CATG 1 cut(s) 35
Hpy188III TCNNGA 2 cut(s) 91, 133
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 2 cut(s) 10, 135
LpnPI CCDG 1 cut(s) 76
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 12, 137
MboI GATC 2 cut(s) 10, 135
MboII GAAGA 2 cut(s) 16, 55
MflI RGATCY 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 2 cut(s) 10, 135
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 12
NspI RCATGY 1 cut(s) 35
PaeI GCATGC 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 10
Sau3AI GATC 2 cut(s) 10, 135
SetI ASST 2 cut(s) 72, 90
SfaNI GCATC 1 cut(s) 84
SgeI CNNG 3 cut(s) 27, 44, 103
SphI GCATGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 9, 17, 56
XceI RCATGY 1 cut(s) 35
XspI CTAG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.