Rorug02G0336900

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000519
Physical Location & Seq
Forward (+)
41876739 .. 41880922
4184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0336900.1

Sequence Viewer

Length: 2175 bp
ATGCCCCAGACAGGCAAATCCACCCGAGAACCGGGTTTCGACTCGCTCCCGACTCGCTTCCGCGACTCAGTCACTTGCAATGACGACCATAATAAGAACAAGCCCGATTTCAAAGAGCTCGATCTGGGGGGCTCACCCGTCTCGCCCTTGATGACCAGGACCTCAGTGAACGGCGTTAACAACAATGGAGGTGGCGCCGCCACTACTTCCAGCTCCAGTTCGAGCTCTTCCGGCTCAGTTTCCAGCAAAACCCAGCTGGGGAGAAGATCCGACGGCAGTAGACCCAACAACCACTCCGGCGAGCTAACTGTCTCCTCCGAAATGAGCCCCAGAGCTTCCGAGAGCGTCCGATCCGGAACCACGCCGCGTAATTGGAAGCCGGAGCATCGGAGATCGGTCTCCGCCGGGCCGCCGTTGATCTACTCCGGCAAAACGTTCACCGGCGGTAGTAACGTTAGTTCCGGGGGTAGTTTTGGTAATGCTTGTGGAAATGTAGCAACCAATAATTCATCTTCAACCTCCACAACTGTGTTTCCCAGCGGCAATATATGCCCTTCCGGGAAAATTACGAAGTCTGGAATTGTGTGTAGAGCCAGCAGTAAGACTGATGTGTTGGGTTCGGGGTGCGGCAACTACGGCCACGGTAGCATAGTTCGAGGGGTTTCGAAATCGGATGCTACTAGTTCCAATGTGGGTGGCAACTTTCAGATTGGTGGGGAGTCTGTGGTGGTTAAGAGGGCAATGGGGAACTCTGATCCGGAGGAGGTGAAGAAGGCTGGGAATGAGATGTACAGGAAAGGCCATTTTGCGGAGGCATTGACAATGTATGATCGCGCTGTGTCTTTGTCTCCGGACAACGCTGCTTACCGGAGTAACAGGGCGGCGGCATTGACCGCGCTGGGGCGGCTGGCCGAGGCTGTGAGGGAGTGTGAGGAGGCTGTCAGGTTGGACCCTGGTTATGGGAGGGCGCATCAACGGCTTGGTTCGCTTTATCTTCGTTTTGGGCTAGCTGAGAATGCCTCCCACCACCTCTCATTTCCTGGACAAAGGCCAGAGCAGTCTGAGTTGCAGAAGTTGAAGTCCCTGGAGAAGCATCTGAAACAATGTTCAGATGCCCGTAAGCTTGGTGATTGGAAGAATGTGCTAAGGGAATCGGATGCAGCCATAGAAATGGGAGTGGAGTCCTCCCCTCAGCTTGTGGCGTCCAAGGTAGAAGCTCTATTGAAGCTCCATAAACTCGAAGATGCAGAATCCATCCTATCAAACATACCCAAGTTTGAAAATTATCCTTCTTCCTGCTTGCAAACCAAGTTATTTGGCATGCTCGTTGAAGCTTATGTACTCTATGTAAGGGCCCTGGTTGAAATGGCATTCGGAAGGTTTGAGAATGCAGTAGCAGCTGTAGAGAAGGCTGGTGTAATTGATTACAGCAGTGTTGAAGTTACAAGGGTATCAAATATTGTGAAAATGGTTGCGAAAGCTCGTTCTCAAGGTAACGATCTTTTTAGCTCTGGAAGGTTTGCTGAAGCCTGCGCTGCTTATGGGGAGGGCCTCAAGTATGATAGTTCCAATTCTGTTCTATACTGCAATAGAGCAGTTTGCTGGTCTAAGCTTGGACAATGGGAACAGTCTGTTGAAGACTGCAACCAAGCCCTCAAGATTCAGCCTCATTACACCAAAGCCCTTCTAAGAAGGGCTGTGTCGAACGCAAAGTTAGAACGATGGGCAGAGGCAGTGAGAGATTATGAGGTCTTGAGGAGGGAACTCCCCGGAGACAATGAGGTTGTTGAATCTCTTCACCAGGCTCGAGTGGCATTGAGGAAGTTCCGTGGAGAGGAACTTCATCATGTAAAGTCTGGCGGTGAAGTGGAAGAAGTTTCTAATTTAAATAAGTTTAAAGCTGCAATATCATCACCTGGTGTTTCTGTCATTCATTTCAAAGTTGCATCCAATGAGCAATGTGAAGAACTATCCCCATTCATAAATATGCTTTGCGTTAGATATCCATCTGTTAAATTTTTTAAGGTGGATGTGGAGGAGAGCTTAGCCATAGCAAAAGCTGAGAGCATAAGATCTGTTCCAACATTTAAAATTTACAAGAATGGTGAAAAGGTCAAGGAGATGGTCCGCCCAAGCCACCAATTCTTAGAGGACTCTGTGAGAACCAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

724

Amino Acids

78.55

Weight (kDa)

8.96

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 259 - 320 1.2e-08 Tetratricopeptide repeat
TPR_11 PF13414 260 - 301 1.2e-06 TPR repeat
TPR_1 PF00515 527 - 558 1.6e-07 Tetratricopeptide repeat
Thioredoxin PF00085 629 - 712 7.5e-11 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccI GTMKAC 1 cut(s) 280
AccII CGCG 4 cut(s) 63, 367, 834, 896
AccIII TCCGGA 3 cut(s) 353, 757, 850
AclI AACGTT 2 cut(s) 434, 453
AclWI GGATC 3 cut(s) 261, 345, 749
AcoI YGGCCR 2 cut(s) 637, 909
AcsI RAATTY 2 cut(s) 2015, 2091
AcuI CTGAAG 1 cut(s) 1545
AcyI GRCGYC 2 cut(s) 195, 1202
AdeI CACNNNGTG 1 cut(s) 1919
AfaI GTAC 2 cut(s) 791, 1341
AfiI CCNNNNNNNGG 7 cut(s) 11, 31, 258, 808, 900, 959, 1834
AhlI ACTAGT 1 cut(s) 680
AjnI CCWGG 7 cut(s) 155, 952, 1039, 1083, 1356, 1800, 1915
AleI CACNNNNGTG 1 cut(s) 527
Alw21I GWGCWC 2 cut(s) 120, 227
Alw26I GTCTC 5 cut(s) 145, 316, 403, 852, 1767
AlwI GGATC 3 cut(s) 261, 345, 749
Ama87I CYCGRG 2 cut(s) 24, 1806
Aor13HI TCCGGA 3 cut(s) 353, 757, 850
AoxI GGCC 7 cut(s) 407, 637, 799, 909, 1049, 1353, 1549
ApaI GGGCCC 1 cut(s) 1357
ApeKI GCWGC 5 cut(s) 860, 1160, 1397, 1535, 1901
ApoI RAATTY 2 cut(s) 2015, 2091
Asp700I GAANNNNTTC 1 cut(s) 1794
AspLEI GCGC 5 cut(s) 197, 836, 898, 970, 1535
AspS9I GGNCC 7 cut(s) 159, 407, 949, 1353, 1354, 1549, 2125
AsuC2I CCSGG 5 cut(s) 33, 406, 463, 559, 1770
AsuHPI GGTGA 8 cut(s) 126, 430, 778, 1139, 1790, 1874, 1905, 2117
AsuII TTCGAA 1 cut(s) 665
AsuNHI GCTAGC 1 cut(s) 1006
AvaI CYCGRG 2 cut(s) 24, 1806
AvaII GGWCC 3 cut(s) 159, 949, 2125
BaeGI GKGCMC 1 cut(s) 1357
BaeI ACNNNNGTAYC 2 cut(s) 1434, 1467
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 5 cut(s) 120, 134, 227, 329, 1357
BarI GAAGNNNNNNTAC 2 cut(s) 1323, 1355
BbsI GAAGAC 1 cut(s) 1644
Bbv12I GWGCWC 2 cut(s) 120, 227
BbvCI CCTCAGC 1 cut(s) 1191
BbvI GCAGC 5 cut(s) 847, 1172, 1409, 1522, 1888
BccI CCATC 4 cut(s) 1262, 1716, 2014, 2116
BceAI ACGGC 5 cut(s) 187, 289, 397, 652, 992
BciT130I CCWGG 7 cut(s) 157, 954, 1041, 1085, 1358, 1802, 1917
BcnI CCSGG 5 cut(s) 33, 406, 463, 559, 1770
BcoDI GTCTC 5 cut(s) 145, 316, 403, 852, 1767
BcuI ACTAGT 1 cut(s) 680
BfaI CTAG 3 cut(s) 681, 1007, 2173
BfmI CTRYAG 1 cut(s) 1401
BfoI RGCGCY 1 cut(s) 198
BglII AGATCT 1 cut(s) 2072
BlpI GCTNAGC 1 cut(s) 2044
Bme18I GGWCC 3 cut(s) 159, 949, 2125
BmeT110I CYCGRG 2 cut(s) 24, 1806
BmgT120I GGNCC 7 cut(s) 159, 407, 949, 1353, 1354, 1549, 2125
BmiI GGNNCC 4 cut(s) 196, 358, 951, 1355
BmsI GCATC 8 cut(s) 394, 664, 979, 1102, 1102, 1147, 1234, 1955
BmtI GCTAGC 1 cut(s) 1010
BpiI GAAGAC 1 cut(s) 1644
BplI GAGNNNNNCTC 2 cut(s) 1004, 1036
BpmI CTGGAG 2 cut(s) 199, 1106
Bpu10I CCTNAGC 2 cut(s) 1145, 1191
Bpu1102I GCTNAGC 1 cut(s) 2044
Bpu14I TTCGAA 1 cut(s) 665
BpuEI CTTGAG 4 cut(s) 1473, 1538, 1640, 1774
BpuMI CCSGG 5 cut(s) 33, 406, 463, 559, 1770
BsaBI GATNNNNATC 1 cut(s) 2005
BsaHI GRCGYC 2 cut(s) 195, 1202
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 9 cut(s) 462, 640, 912, 952, 1083, 1206, 1356, 1768, 1828
BsaWI WCCGGW 4 cut(s) 353, 757, 850, 867
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 7 cut(s) 11, 31, 258, 808, 900, 959, 1834
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 2 cut(s) 216, 2166
Bse3DI GCAATG 3 cut(s) 85, 747, 1964
Bse8I GATNNNNATC 1 cut(s) 2005
BseAI TCCGGA 3 cut(s) 353, 757, 850
BseBI CCWGG 7 cut(s) 157, 954, 1041, 1085, 1358, 1802, 1917
BseDI CCNNGG 9 cut(s) 462, 640, 912, 952, 1083, 1206, 1356, 1768, 1828
BseGI GGATG 5 cut(s) 679, 1162, 1254, 1946, 2035
BseJI GATNNNNATC 1 cut(s) 2005
BseLI CCNNNNNNNGG 7 cut(s) 11, 31, 258, 808, 900, 959, 1834
BseMI GCAATG 3 cut(s) 85, 747, 1964
BseMII CTCAG 7 cut(s) 81, 177, 249, 1002, 1053, 1205, 2052
BseNI ACTGG 2 cut(s) 216, 2166
BseRI GAGGAG 5 cut(s) 304, 776, 947, 1771, 2051
BseSI GKGCMC 1 cut(s) 1357
BseXI GCAGC 5 cut(s) 847, 1172, 1409, 1522, 1888
BseYI CCCAGC 5 cut(s) 252, 256, 536, 776, 898
Bsh1236I CGCG 4 cut(s) 63, 367, 834, 896
BshFI GGCC 7 cut(s) 409, 639, 801, 911, 1051, 1355, 1551
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 2 cut(s) 120, 227
BsiHKCI CYCGRG 2 cut(s) 24, 1806
BslFI GGGAC 1 cut(s) 1066
BslI CCNNNNNNNGG 7 cut(s) 11, 31, 258, 808, 900, 959, 1834
BsmAI GTCTC 5 cut(s) 145, 316, 403, 852, 1767
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 1066
BsmI GAATGC 3 cut(s) 1021, 1370, 1393
BsnI GGCC 7 cut(s) 409, 639, 801, 911, 1051, 1355, 1551
Bso31I GGTCTC 1 cut(s) 403
BsoBI CYCGRG 2 cut(s) 24, 1806
Bsp119I TTCGAA 1 cut(s) 665
Bsp120I GGGCCC 1 cut(s) 1353
Bsp1286I GDGCHC 5 cut(s) 120, 134, 227, 329, 1357
Bsp13I TCCGGA 3 cut(s) 353, 757, 850
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 9 cut(s) 121, 266, 350, 392, 417, 754, 829, 1498, 2072
Bsp1720I GCTNAGC 1 cut(s) 2044
BspANI GGCC 7 cut(s) 409, 639, 801, 911, 1051, 1355, 1551
BspCNI CTCAG 7 cut(s) 80, 176, 248, 1003, 1054, 1204, 2053
BspEI TCCGGA 3 cut(s) 353, 757, 850
BspFNI CGCG 4 cut(s) 63, 367, 834, 896
BspLI GGNNCC 4 cut(s) 196, 358, 951, 1355
BspOI GCTAGC 1 cut(s) 1010
BspPI GGATC 3 cut(s) 261, 345, 749
BspQI GCTCTTC 1 cut(s) 232
BspT104I TTCGAA 1 cut(s) 665
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 403
BsrDI GCAATG 3 cut(s) 85, 747, 1964
BsrFI RCCGGY 1 cut(s) 440
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 2 cut(s) 216, 2166
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 9 cut(s) 462, 640, 912, 952, 1083, 1206, 1356, 1768, 1828
BssMI GATC 9 cut(s) 121, 266, 350, 392, 417, 754, 829, 1498, 2072
BssNI GRCGYC 2 cut(s) 195, 1202
BssT1I CCWWGG 1 cut(s) 1206
Bst2UI CCWGG 7 cut(s) 157, 954, 1041, 1085, 1358, 1802, 1917
Bst4CI ACNGT 4 cut(s) 310, 529, 644, 1629
Bst6I CTCTTC 2 cut(s) 232, 1800
BstACI GRCGYC 2 cut(s) 195, 1202
BstAPI GCANNNNNTGC 1 cut(s) 549
BstAUI TGTACA 1 cut(s) 789
BstBI TTCGAA 1 cut(s) 665
BstC8I GCNNGC 7 cut(s) 302, 595, 909, 1008, 1301, 1322, 1531
BstDSI CCRYGG 2 cut(s) 640, 1828
BstF5I GGATG 5 cut(s) 679, 1162, 1254, 1946, 2035
BstFNI CGCG 4 cut(s) 63, 367, 834, 896
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 5 cut(s) 197, 836, 898, 970, 1535
BstKTI GATC 9 cut(s) 124, 269, 353, 395, 420, 757, 832, 1501, 2075
BstMAI GTCTC 5 cut(s) 145, 316, 403, 852, 1767
BstMBI GATC 9 cut(s) 121, 266, 350, 392, 417, 754, 829, 1498, 2072
BstNI CCWGG 7 cut(s) 157, 954, 1041, 1085, 1358, 1802, 1917
BstNSI RCATGY 1 cut(s) 1324
BstSFI CTRYAG 1 cut(s) 1401
BstSLI GKGCMC 1 cut(s) 1357
BstUI CGCG 4 cut(s) 63, 367, 834, 896
BstV1I GCAGC 5 cut(s) 847, 1172, 1409, 1522, 1888
BstV2I GAAGAC 1 cut(s) 1644
BstX2I RGATCY 2 cut(s) 266, 2072
BstXI CCANNNNNNTGG 1 cut(s) 1171
BstYI RGATCY 2 cut(s) 266, 2072
BsuRI GGCC 7 cut(s) 409, 639, 801, 911, 1051, 1355, 1551
BtgI CCRYGG 2 cut(s) 640, 1828
BtsCI GGATG 5 cut(s) 679, 1162, 1254, 1946, 2035
BtsI GCAGTG 2 cut(s) 1438, 1740
BtsIMutI CAGTG 3 cut(s) 171, 1438, 1740
Cac8I GCNNGC 7 cut(s) 302, 595, 909, 1008, 1301, 1322, 1531
CfoI GCGC 5 cut(s) 197, 836, 898, 970, 1535
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 7 cut(s) 159, 407, 949, 1353, 1354, 1549, 2125
CseI GACGC 2 cut(s) 334, 1191
CsiI ACCWGGT 1 cut(s) 1915
Csp6I GTAC 2 cut(s) 790, 1340
CspCI CAANNNNNGTGG 4 cut(s) 172, 207, 676, 711
CviAII CATG 2 cut(s) 1321, 1847
CviQI GTAC 2 cut(s) 790, 1340
DinI GGCGCC 1 cut(s) 196
DpnI GATC 9 cut(s) 123, 268, 352, 394, 419, 756, 831, 1500, 2074
DpnII GATC 9 cut(s) 121, 266, 350, 392, 417, 754, 829, 1498, 2072
DraI TTTAAA 3 cut(s) 1887, 1897, 2089
DraIII CACNNNGTG 1 cut(s) 1919
EaeI YGGCCR 2 cut(s) 637, 909
Eam1104I CTCTTC 2 cut(s) 232, 1800
EarI CTCTTC 2 cut(s) 232, 1800
EciI GGCGGA 2 cut(s) 391, 2117
Ecl136II GAGCTC 2 cut(s) 118, 225
Eco130I CCWWGG 1 cut(s) 1206
Eco24I GRGCYC 5 cut(s) 120, 134, 227, 329, 1357
Eco31I GGTCTC 1 cut(s) 403
Eco32I GATATC 1 cut(s) 2003
Eco47I GGWCC 3 cut(s) 159, 949, 2125
Eco53kI GAGCTC 2 cut(s) 118, 225
Eco57I CTGAAG 1 cut(s) 1545
Eco88I CYCGRG 2 cut(s) 24, 1806
EcoICRI GAGCTC 2 cut(s) 118, 225
EcoO109I RGGNCCY 4 cut(s) 159, 1353, 1354, 1549
EcoRII CCWGG 7 cut(s) 155, 952, 1039, 1083, 1356, 1800, 1915
EcoRV GATATC 1 cut(s) 2003
EcoT14I CCWWGG 1 cut(s) 1206
EcoT38I GRGCYC 5 cut(s) 120, 134, 227, 329, 1357
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 1206
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 2 cut(s) 1324, 1850
FaqI GGGAC 1 cut(s) 1066
FatI CATG 2 cut(s) 1320, 1846
FblI GTMKAC 1 cut(s) 280
FokI GGATG 5 cut(s) 686, 1169, 1241, 1933, 2042
FriOI GRGCYC 5 cut(s) 120, 134, 227, 329, 1357
FspBI CTAG 3 cut(s) 681, 1007, 2173
GlaI GCGC 5 cut(s) 196, 835, 897, 969, 1534
GsaI CCCAGC 5 cut(s) 256, 260, 540, 780, 902
GsuI CTGGAG 2 cut(s) 199, 1106
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 7 cut(s) 409, 639, 801, 911, 1051, 1355, 1551
HgaI GACGC 2 cut(s) 334, 1191
HhaI GCGC 5 cut(s) 197, 836, 898, 970, 1535
Hin1I GRCGYC 2 cut(s) 195, 1202
Hin1II CATG 2 cut(s) 1324, 1850
Hin6I GCGC 5 cut(s) 195, 834, 896, 968, 1533
HinP1I GCGC 5 cut(s) 195, 834, 896, 968, 1533
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 3 cut(s) 1121, 1332, 1610
HpaI GTTAAC 1 cut(s) 178
HphI GGTGA 8 cut(s) 126, 430, 778, 1139, 1790, 1874, 1905, 2117
Hpy166II GTNNAC 4 cut(s) 169, 178, 281, 438
Hpy188III TCNNGA 8 cut(s) 49, 354, 576, 758, 851, 1512, 1657, 1753
Hpy8I GTNNAC 4 cut(s) 169, 178, 281, 438
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 8 cut(s) 564, 766, 1299, 1371, 1402, 1509, 1686, 1694
HpyCH4III ACNGT 4 cut(s) 310, 529, 644, 1629
HpyCH4IV ACGT 2 cut(s) 434, 453
HpySE526I ACGT 2 cut(s) 434, 453
Hsp92I GRCGYC 2 cut(s) 195, 1202
Hsp92II CATG 2 cut(s) 1324, 1850
HspAI GCGC 5 cut(s) 195, 834, 896, 968, 1533
KasI GGCGCC 1 cut(s) 194
Kpn2I TCCGGA 3 cut(s) 353, 757, 850
KspAI GTTAAC 1 cut(s) 178
Kzo9I GATC 9 cut(s) 121, 266, 350, 392, 417, 754, 829, 1498, 2072
LguI GCTCTTC 1 cut(s) 232
LmnI GCTCC 4 cut(s) 51, 218, 382, 1233
Lsp1109I GCAGC 5 cut(s) 847, 1172, 1409, 1522, 1888
LweI GCATC 8 cut(s) 394, 664, 979, 1102, 1102, 1147, 1234, 1955
MabI ACCWGGT 1 cut(s) 1915
MaeI CTAG 3 cut(s) 681, 1007, 2173
MaeII ACGT 2 cut(s) 434, 453
MaeIII GTNAC 5 cut(s) 70, 449, 872, 1441, 1493
MalI GATC 9 cut(s) 123, 268, 352, 394, 419, 756, 831, 1500, 2074
MboI GATC 9 cut(s) 121, 266, 350, 392, 417, 754, 829, 1498, 2072
MflI RGATCY 2 cut(s) 266, 2072
MhlI GDGCHC 5 cut(s) 120, 134, 227, 329, 1357
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 6 cut(s) 35, 46, 59, 728, 1190, 2147
MmeI TCCRAC 3 cut(s) 294, 927, 2105
MroI TCCGGA 3 cut(s) 353, 757, 850
MroXI GAANNNNTTC 1 cut(s) 1794
MseI TTAA 7 cut(s) 177, 732, 1886, 1896, 2013, 2022, 2088
MslI CAYNNNNRTG 3 cut(s) 527, 1169, 1985
MspA1I CMGCKG 3 cut(s) 256, 540, 1400
Mva1269I GAATGC 3 cut(s) 1021, 1370, 1393
MvaI CCWGG 7 cut(s) 157, 954, 1041, 1085, 1358, 1802, 1917
MvnI CGCG 4 cut(s) 63, 367, 834, 896
NarI GGCGCC 1 cut(s) 195
NciI CCSGG 5 cut(s) 33, 406, 463, 559, 1770
NdeII GATC 9 cut(s) 121, 266, 350, 392, 417, 754, 829, 1498, 2072
NheI GCTAGC 1 cut(s) 1006
NlaIII CATG 2 cut(s) 1324, 1850
NlaIV GGNNCC 4 cut(s) 196, 358, 951, 1355
NmeAIII GCCGAG 1 cut(s) 937
NmuCI GTSAC 1 cut(s) 70
NspI RCATGY 1 cut(s) 1324
NspV TTCGAA 1 cut(s) 665
OliI CACNNNNGTG 1 cut(s) 527
PaeI GCATGC 1 cut(s) 1324
PaeR7I CTCGAG 1 cut(s) 1806
PciSI GCTCTTC 1 cut(s) 232
PctI GAATGC 3 cut(s) 1021, 1370, 1393
PdmI GAANNNNTTC 1 cut(s) 1794
PfeI GAWTC 4 cut(s) 1151, 1250, 1660, 1790
PflFI GACNNNGTC 1 cut(s) 68
PfoI TCCNGGA 2 cut(s) 557, 1039
PleI GAGTC 6 cut(s) 35, 46, 59, 727, 1189, 2147
PluTI GGCGCC 1 cut(s) 198
PpsI GAGTC 6 cut(s) 35, 46, 59, 727, 1189, 2147
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 2 cut(s) 120, 227
Psp1406I AACGTT 2 cut(s) 434, 453
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 7 cut(s) 155, 952, 1039, 1083, 1356, 1800, 1915
PspFI CCCAGC 5 cut(s) 252, 256, 536, 776, 898
PspGI CCWGG 7 cut(s) 155, 952, 1039, 1083, 1356, 1800, 1915
PspN4I GGNNCC 4 cut(s) 196, 358, 951, 1355
PspOMI GGGCCC 1 cut(s) 1353
PspPI GGNCC 7 cut(s) 159, 407, 949, 1353, 1354, 1549, 2125
PspPPI RGGWCCY 1 cut(s) 159
PspXI VCTCGAGB 1 cut(s) 1806
PsrI GAACNNNNNNTAC 2 cut(s) 442, 474
PsuI RGATCY 2 cut(s) 266, 2072
PsyI GACNNNGTC 1 cut(s) 68
PvuII CAGCTG 2 cut(s) 256, 1400
RsaI GTAC 2 cut(s) 791, 1341
RsaNI GTAC 2 cut(s) 790, 1340
RseI CAYNNNNRTG 3 cut(s) 527, 1169, 1985
SacI GAGCTC 2 cut(s) 120, 227
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 7 cut(s) 177, 732, 1886, 1896, 2013, 2022, 2088
Sau3AI GATC 9 cut(s) 121, 266, 350, 392, 417, 754, 829, 1498, 2072
Sau96I GGNCC 7 cut(s) 159, 407, 949, 1353, 1354, 1549, 2125
SchI GAGTC 6 cut(s) 35, 46, 59, 728, 1190, 2147
SduI GDGCHC 5 cut(s) 120, 134, 227, 329, 1357
SexAI ACCWGGT 1 cut(s) 1915
SfaNI GCATC 8 cut(s) 394, 664, 979, 1102, 1102, 1147, 1234, 1955
SfcI CTRYAG 1 cut(s) 1401
SfoI GGCGCC 1 cut(s) 196
Sfr274I CTCGAG 1 cut(s) 1806
SfuI TTCGAA 1 cut(s) 665
SgrAI CRCCGGYG 1 cut(s) 440
SinI GGWCC 3 cut(s) 159, 949, 2125
SlaI CTCGAG 1 cut(s) 1806
SmiI ATTTAAAT 1 cut(s) 1887
SmiMI CAYNNNNRTG 3 cut(s) 527, 1169, 1985
SmlI CTYRAG 5 cut(s) 1488, 1553, 1655, 1753, 1806
SmoI CTYRAG 5 cut(s) 1488, 1553, 1655, 1753, 1806
SpeI ACTAGT 1 cut(s) 680
SphI GCATGC 1 cut(s) 1324
SspDI GGCGCC 1 cut(s) 194
SspI AATATT 1 cut(s) 1459
SspMI CTAG 3 cut(s) 681, 1007, 2173
SstI GAGCTC 2 cut(s) 120, 227
StyI CCWWGG 1 cut(s) 1206
SwaI ATTTAAAT 1 cut(s) 1887
TaaI ACNGT 4 cut(s) 310, 529, 644, 1629
TaiI ACGT 2 cut(s) 437, 456
TaqI TCGA 8 cut(s) 39, 120, 221, 655, 665, 1239, 1703, 1807
TaqII GACCGA 1 cut(s) 385
TatI WGTACW 2 cut(s) 789, 1339
TauI GCSGC 8 cut(s) 200, 367, 412, 543, 630, 884, 887, 907
TfiI GAWTC 4 cut(s) 1151, 1250, 1660, 1790
Tru1I TTAA 7 cut(s) 177, 732, 1886, 1896, 2013, 2022, 2088
Tru9I TTAA 7 cut(s) 177, 732, 1886, 1896, 2013, 2022, 2088
TscAI CASTG 3 cut(s) 171, 1438, 1740
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 5 cut(s) 860, 1160, 1397, 1535, 1901
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 4 cut(s) 498, 1832, 1922, 1969
TspGWI ACGGA 1 cut(s) 1817
TspRI CASTG 3 cut(s) 171, 1438, 1740
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 3 cut(s) 159, 949, 2125
XapI RAATTY 2 cut(s) 2015, 2091
XceI RCATGY 1 cut(s) 1324
XhoI CTCGAG 1 cut(s) 1806
XmiI GTMKAC 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 1794
XspI CTAG 3 cut(s) 681, 1007, 2173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.