Rw2G010910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000519
Physical Location & Seq
Reverse (-)
11023992 .. 11028233
4242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G010910.1

Sequence Viewer

Length: 276 bp
ATGGGCATTGCTAATTCAAGCTCCAATTTAAAATTGTCGTTGGCTGCCGCAGATCCTATGCATGACTGCAGTTGCAGCGCATGGTCCGGCTTTCTCGTTTGGGTAAAAAGATTAACACTGGATTTCCAACCGATCTTCCGAAACATGAAGAAAGATCCAAGTTCATTGATGTTGCATGCTGTGATGAAGAATGTCGCCAAACTGAGTTATGAGCTAAAGAAGCACTATACTGTTGGAGAGCTAAGAAAACTACAATCTTGCAGAGTTGTAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.24

Weight (kDa)

9.67

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 48
AclWI GGATC 2 cut(s) 47, 149
AgsI TTSAA 1 cut(s) 18
AluBI AGCT 3 cut(s) 21, 214, 241
AluI AGCT 3 cut(s) 21, 214, 241
AlwI GGATC 2 cut(s) 47, 149
ApeKI GCWGC 2 cut(s) 44, 75
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 84
AvaII GGWCC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 31, 87
BfmI CTRYAG 1 cut(s) 67
BisI GCNGC 3 cut(s) 45, 48, 76
BlsI GCNGC 3 cut(s) 46, 49, 77
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 6
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 31, 87
BsiSI CCGG 1 cut(s) 87
Bsp143I GATC 3 cut(s) 52, 132, 154
BspACI CCGC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 71
BspPI GGATC 2 cut(s) 47, 149
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 1 cut(s) 123
BssMI GATC 3 cut(s) 52, 132, 154
Bst4CI ACNGT 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 203, 242
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 3 cut(s) 55, 135, 157
BstMBI GATC 3 cut(s) 52, 132, 154
BstMWI GCNNNNNNNGC 2 cut(s) 75, 220
BstNSI RCATGY 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 31, 87
BstX2I RGATCY 2 cut(s) 52, 154
BstYI RGATCY 2 cut(s) 52, 154
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 84
CviAII CATG 4 cut(s) 62, 81, 145, 176
CviJI RGCY 5 cut(s) 21, 44, 90, 214, 241
CviKI_1 RGCY 5 cut(s) 21, 44, 90, 214, 241
DdeI CTNAG 2 cut(s) 203, 242
DpnI GATC 3 cut(s) 54, 134, 156
DpnII GATC 3 cut(s) 52, 132, 154
DraI TTTAAA 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 63
FaeI CATG 4 cut(s) 65, 84, 148, 179
FaiI YATR 7 cut(s) 59, 63, 82, 146, 177, 210, 228
FatI CATG 4 cut(s) 61, 80, 144, 175
Fnu4HI GCNGC 3 cut(s) 45, 48, 76
Fsp4HI GCNGC 3 cut(s) 45, 48, 76
GlaI GCGC 1 cut(s) 79
GluI GCNGC 3 cut(s) 45, 48, 76
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 80
Hin1II CATG 4 cut(s) 65, 84, 148, 179
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HpaII CCGG 1 cut(s) 87
Hpy188I TCNGA 2 cut(s) 140, 275
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 5 cut(s) 61, 69, 75, 175, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 220
HpyF3I CTNAG 2 cut(s) 203, 242
Hsp92II CATG 4 cut(s) 65, 84, 148, 179
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 3 cut(s) 52, 132, 154
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 2 cut(s) 100, 104
Lsp1109I GCAGC 2 cut(s) 31, 87
MalI GATC 3 cut(s) 54, 134, 156
MboI GATC 3 cut(s) 52, 132, 154
MboII GAAGA 3 cut(s) 127, 160, 199
MflI RGATCY 2 cut(s) 52, 154
MluCI AATT 3 cut(s) 13, 25, 32
MmeI TCCRAC 2 cut(s) 151, 214
Mph1103I ATGCAT 1 cut(s) 63
MseI TTAA 2 cut(s) 29, 113
MspI CCGG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 75, 220
NdeII GATC 3 cut(s) 52, 132, 154
NlaIII CATG 4 cut(s) 65, 84, 148, 179
NsiI ATGCAT 1 cut(s) 63
NspI RCATGY 1 cut(s) 179
PaeI GCATGC 1 cut(s) 179
PkrI GCNGC 3 cut(s) 46, 49, 77
PspPI GGNCC 1 cut(s) 84
PstI CTGCAG 1 cut(s) 71
PsuI RGATCY 2 cut(s) 52, 154
SaqAI TTAA 2 cut(s) 29, 113
SatI GCNGC 3 cut(s) 45, 48, 76
Sau3AI GATC 3 cut(s) 52, 132, 154
Sau96I GGNCC 1 cut(s) 84
SetI ASST 3 cut(s) 23, 216, 243
SfcI CTRYAG 1 cut(s) 67
SinI GGWCC 1 cut(s) 84
SphI GCATGC 1 cut(s) 179
Sse9I AATT 3 cut(s) 13, 25, 32
SsiI CCGC 1 cut(s) 48
TaaI ACNGT 1 cut(s) 232
TasI AATT 3 cut(s) 13, 25, 32
TauI GCSGC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 29, 113
Tru9I TTAA 2 cut(s) 29, 113
TscAI CASTG 1 cut(s) 123
TseI GCWGC 2 cut(s) 44, 75
TspDTI ATGAA 3 cut(s) 153, 161, 200
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 84
XceI RCATGY 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.