Rh2AG561100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000519
Physical Location & Seq
Reverse (-)
79108021 .. 79108386
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG561100.1

Sequence Viewer

Length: 366 bp
ATGGAGCAGAATATGGGCTCTGCAAAGCAGGCAGAGCTGATTGCTATCAGACGAGGTTTGGACTTGGCTAAGGAACTTGAGCTGCAGCAGGTCACCATTGAGAGTGATTGTCTTGATGCAGTGCAGCTAATCCTTGGCAAAGACCATGACTTGGATGACCTAGGTGCTCTAGTCGATGACATATTGGTACTTACGAGTAGTATGCCGGAGGCACGTATCCAGCATGTGTTGAGAACTAGAAACAGCGTAGCGCATCGGCTTGTTGCCTTTGATTTTGATTCTAATAGCTGTAATGTGGTTTGGCACCAGCAGCCTCCTAGTATTATCCTTGATGTACTGCAATATGATTTTACCCATATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

121

Amino Acids

13.56

Weight (kDa)

4.62

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 3 - 88 3.7e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 303
AccB7I CCANNNNNTGG 1 cut(s) 151
AfaI GTAC 2 cut(s) 189, 336
AfiI CCNNNNNNNGG 1 cut(s) 151
AluBI AGCT 4 cut(s) 37, 82, 127, 288
AluI AGCT 4 cut(s) 37, 82, 127, 288
Alw21I GWGCWC 1 cut(s) 169
ApeKI GCWGC 4 cut(s) 82, 85, 124, 310
AspA2I CCTAGG 1 cut(s) 160
AspLEI GCGC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 85
AvrII CCTAGG 1 cut(s) 160
BanI GGYRCC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 4 cut(s) 69, 97, 136, 322
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BciVI GTATCC 1 cut(s) 227
BfaI CTAG 4 cut(s) 161, 170, 237, 318
BfmI CTRYAG 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 79
BfuI GTATCC 1 cut(s) 227
BisI GCNGC 4 cut(s) 83, 86, 125, 311
BlnI CCTAGG 1 cut(s) 160
BlsI GCNGC 4 cut(s) 84, 87, 126, 312
BmiI GGNNCC 1 cut(s) 305
BmsI GCATC 2 cut(s) 106, 262
Bpu10I CCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 133, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 133, 160
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 151
BseXI GCAGC 4 cut(s) 69, 97, 136, 322
BsgI GTGCAG 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 20, 169
BspLI GGNNCC 1 cut(s) 305
BspMAI CTGCAG 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 303
BssECI CCNNGG 2 cut(s) 133, 160
BssT1I CCWWGG 2 cut(s) 133, 160
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 69
BstEII GGTNACC 1 cut(s) 91
BstF5I GGATG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 253
BstMWI GCNNNNNNNGC 3 cut(s) 29, 34, 310
BstNSI RCATGY 1 cut(s) 227
BstPI GGTNACC 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 83
BstV1I GCAGC 4 cut(s) 69, 97, 136, 322
BsuI GTATCC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 188, 335
CviAII CATG 2 cut(s) 146, 224
CviJI RGCY 8 cut(s) 18, 37, 68, 82, 127, 259, 288, 313
CviKI_1 RGCY 8 cut(s) 18, 37, 68, 82, 127, 259, 288, 313
CviQI GTAC 2 cut(s) 188, 335
DdeI CTNAG 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 133, 160
Eco24I GRGCYC 1 cut(s) 20
Eco91I GGTNACC 1 cut(s) 91
EcoO65I GGTNACC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 133, 160
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 2 cut(s) 133, 160
FaeI CATG 2 cut(s) 149, 227
FaiI YATR 7 cut(s) 14, 147, 182, 203, 225, 345, 357
FatI CATG 2 cut(s) 145, 223
Fnu4HI GCNGC 4 cut(s) 83, 86, 125, 311
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 4 cut(s) 83, 86, 125, 311
FspBI CTAG 4 cut(s) 161, 170, 237, 318
GlaI GCGC 1 cut(s) 252
GluI GCNGC 4 cut(s) 83, 86, 125, 311
HapII CCGG 1 cut(s) 206
HhaI GCGC 1 cut(s) 253
Hin1II CATG 2 cut(s) 149, 227
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 50
Hpy188III TCNNGA 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 5 cut(s) 23, 85, 119, 124, 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 34, 310
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 2 cut(s) 149, 227
HspAI GCGC 1 cut(s) 251
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 14, 74, 219, 233, 320
Lsp1109I GCAGC 4 cut(s) 69, 97, 136, 322
LweI GCATC 2 cut(s) 106, 262
MaeI CTAG 4 cut(s) 161, 170, 237, 318
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 91
MhlI GDGCHC 2 cut(s) 20, 169
MnlI CCTC 3 cut(s) 47, 202, 324
MseI TTAA 1 cut(s) 364
MspI CCGG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 29, 34, 310
NlaIII CATG 2 cut(s) 149, 227
NlaIV GGNNCC 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 1 cut(s) 227
PfeI GAWTC 1 cut(s) 278
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 4 cut(s) 84, 87, 126, 312
Ppu21I YACGTR 1 cut(s) 215
PspEI GGTNACC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 305
PstI CTGCAG 1 cut(s) 87
RsaI GTAC 2 cut(s) 189, 336
RsaNI GTAC 2 cut(s) 188, 335
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 4 cut(s) 83, 86, 125, 311
SduI GDGCHC 2 cut(s) 20, 169
SetI ASST 9 cut(s) 39, 58, 84, 93, 129, 162, 166, 217, 290
SfaNI GCATC 2 cut(s) 106, 262
SfcI CTRYAG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SspMI CTAG 4 cut(s) 161, 170, 237, 318
StyI CCWWGG 2 cut(s) 133, 160
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 174
TatI WGTACW 1 cut(s) 334
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 4 cut(s) 82, 85, 124, 310
Tsp45I GTSAC 1 cut(s) 91
TspRI CASTG 1 cut(s) 126
Van91I CCANNNNNTGG 1 cut(s) 151
XceI RCATGY 1 cut(s) 227
XmaJI CCTAGG 1 cut(s) 160
XspI CTAG 4 cut(s) 161, 170, 237, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.