Rmu_sc0001840.1_g000023

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001840.1
OG0000519
Physical Location & Seq
Forward (+)
77937 .. 78539
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001840.1_g000023.1.cds

Sequence Viewer

Length: 519 bp
atggatcatctcaaccaactaaggagatcatgtttgctaattttatcatggcatgatgaattctgcaaggcaaggcaacttgtgcctgtagctacaactttccagcgaggacgaggaatactaagggatactcaaggcaacttcaaggctgccttcacttgtccagttcaatatgtgcagcacgccaaacaggtagaacttctcgctattaaggaggggttgaaactactatctacttatcctgggcaatctgcaatggttgagatagattgtcttgaagttacaatggacattcaaaaccccagatatgatcttttaccttatgcagctataattgaagacattcgggctcttttgaatactaggccagatatcaaaatctgttttgctccaagattgtgcaacaaggttgcacacaggccggctagtttagcttttgatgatcattgtaatgctgtttggactaacgatccaccagcttgtattcttgatgtactagccaaagaccatgttggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

172

Amino Acids

19.41

Weight (kDa)

6.98

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 12, 464
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 1 cut(s) 495
AgsI TTSAA 7 cut(s) 145, 170, 223, 278, 296, 338, 358
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 4 cut(s) 92, 329, 434, 479
AluI AGCT 4 cut(s) 92, 329, 434, 479
AlwI GGATC 2 cut(s) 12, 464
AoxI GGCC 2 cut(s) 365, 419
ApeKI GCWGC 3 cut(s) 149, 178, 326
ApoI RAATTY 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 136, 190, 338
BciT130I CCWGG 1 cut(s) 243
BciVI GTATCC 1 cut(s) 121
BclI TGATCA 1 cut(s) 442
BfaI CTAG 3 cut(s) 363, 426, 497
BfmI CTRYAG 1 cut(s) 87
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 3 cut(s) 150, 179, 327
BlsI GCNGC 3 cut(s) 151, 180, 328
Bme1390I CCNGG 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 164
BseXI GCAGC 3 cut(s) 136, 190, 338
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 2 cut(s) 367, 421
BsiSI CCGG 1 cut(s) 422
BsnI GGCC 2 cut(s) 367, 421
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 5 cut(s) 4, 26, 310, 442, 469
BspANI GGCC 2 cut(s) 367, 421
BspPI GGATC 2 cut(s) 12, 464
BsrDI GCAATG 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 5 cut(s) 4, 26, 310, 442, 469
Bst2UI CCWGG 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 183, 423
BstDEI CTNAG 2 cut(s) 20, 122
BstKTI GATC 5 cut(s) 7, 29, 313, 445, 472
BstMBI GATC 5 cut(s) 4, 26, 310, 442, 469
BstMWI GCNNNNNNNGC 2 cut(s) 82, 431
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 136, 190, 338
BstV2I GAAGAC 1 cut(s) 345
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 2 cut(s) 367, 421
Cac8I GCNNGC 2 cut(s) 183, 423
Cfr10I RCCGGY 1 cut(s) 421
Csp6I GTAC 1 cut(s) 494
CviAII CATG 4 cut(s) 30, 48, 53, 509
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 2 cut(s) 20, 122
DpnI GATC 5 cut(s) 6, 28, 312, 444, 471
DpnII GATC 5 cut(s) 4, 26, 310, 442, 469
Eco24I GRGCYC 1 cut(s) 352
Eco32I GATATC 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 241
EcoRV GATATC 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 352
FaeI CATG 4 cut(s) 33, 51, 56, 512
FaiI YATR 8 cut(s) 31, 49, 54, 174, 309, 324, 332, 510
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 4 cut(s) 29, 47, 52, 508
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 3 cut(s) 150, 179, 327
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 3 cut(s) 150, 179, 327
FspBI CTAG 3 cut(s) 363, 426, 497
GluI GCNGC 3 cut(s) 150, 179, 327
HaeIII GGCC 2 cut(s) 367, 421
HapII CCGG 1 cut(s) 422
Hin1II CATG 4 cut(s) 33, 51, 56, 512
HpaII CCGG 1 cut(s) 422
Hpy188III TCNNGA 2 cut(s) 275, 488
HpyAV CCTTC 1 cut(s) 163
HpyCH4V TGCA 6 cut(s) 66, 178, 254, 326, 402, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 431
HpyF3I CTNAG 2 cut(s) 20, 122
Hsp92II CATG 4 cut(s) 33, 51, 56, 512
KroI GCCGGC 1 cut(s) 421
KroNI GCCGGC 1 cut(s) 423
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 5 cut(s) 4, 26, 310, 442, 469
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 3 cut(s) 136, 190, 338
MaeI CTAG 3 cut(s) 363, 426, 497
MaeIII GTNAC 1 cut(s) 280
MalI GATC 5 cut(s) 6, 28, 312, 444, 471
MboI GATC 5 cut(s) 4, 26, 310, 442, 469
MboII GAAGA 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 3 cut(s) 39, 59, 333
MnlI CCTC 3 cut(s) 101, 107, 208
MroNI GCCGGC 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 450
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 82, 431
NaeI GCCGGC 1 cut(s) 423
NdeII GATC 5 cut(s) 4, 26, 310, 442, 469
NgoMIV GCCGGC 1 cut(s) 421
NlaIII CATG 4 cut(s) 33, 51, 56, 512
PdiI GCCGGC 1 cut(s) 423
PdmI GAANNNNTTC 1 cut(s) 342
PkrI GCNGC 3 cut(s) 151, 180, 328
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 1 cut(s) 450
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 150, 179, 327
Sau3AI GATC 5 cut(s) 4, 26, 310, 442, 469
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 352
SetI ASST 7 cut(s) 94, 195, 322, 331, 411, 436, 481
SfcI CTRYAG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 3 cut(s) 39, 59, 333
SspMI CTAG 3 cut(s) 363, 426, 497
StyD4I CCNGG 1 cut(s) 241
TasI AATT 3 cut(s) 39, 59, 333
TatI WGTACW 1 cut(s) 493
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 3 cut(s) 149, 178, 326
TspDTI ATGAA 1 cut(s) 72
XapI RAATTY 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 3 cut(s) 363, 426, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.