Rorug01G0242400

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000519
Physical Location & Seq
Reverse (-)
34734414 .. 34735358
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0242400.1

Sequence Viewer

Length: 945 bp
ATGGACAGCGGTGGGCATGACGATCATCTGCTACCGGGACAGAGATTTGTCCCCATGGAAGATGAACTGCTTCTCTGCTACTTGAAGCCCATGGTGCATGGAAAGCAAGTACCCGGCAGAGACCTCGTGGTGTTTGACTGTGACCTATACGGTGACCAAGAACCTTGGGAGATATGGGAAACATATAAAACCAGAAGAGCAAACGACTTGAGGAAAAACAAAGACCTCTACTTCTTCGCTCAGCAGAAGAAGAAGACTCCAAAAGACTCGCGGGTAGGCCGAACAGTCGGAAGGGGTGGCACTTGGAAAGAAGAGTCCGGCAAGAAAGTAATTTCTCCGGAGACTAATCGAGTGATTGGCTACAAGAAAACATTCGGTTATAAAAACCAAGGATCCCCGCATGAAGGCTGTTGGATCATGCATGAGTTTGAACTTGATCCATCCCAACTCATACACAGGAAACAAGAAACAAACTATGTTCTTTGTGTACTTCGAAAGAAAAAGGAACCCGAAATCAACAAAAGAAAACGGCAAGAACAGATGCCCGGATACAATTCTGTCCTGGATGATGGAACTAACCTGATTAGCAAGCAACCGAAGCAAGAATGTCTTGTACTATCCACTTCCAATGCATTACCACCGCCATTAGGGTTAGGCGCAGAACAAGATGAACAGGAACAGTGCTTGCAACCTCCATGCATTAATAACCCTAATGCACAAACAGTTCCATTGCCGCCGTGTACCTTTCCTGGTGAAGAAAATCAGGAAGTGCAACACTTTGCAGCTGGAGAGCAATATTGGGGGCAGCAATTTATCGTTCCATCTGGAGATGATCAAAAGAGGAATTTCTCTGAGAGGGAAGAAAAACTGTGGCAGCAGATGGTAGCTGACCTCGGCACCACACCTCACCCTCACACATCATCAATGAGGTCGACGTATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

314

Amino Acids

36.08

Weight (kDa)

6.33

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 145 1.5e-25 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccB1I GGYRCC 1 cut(s) 896
AccI GTMKAC 1 cut(s) 932
AccII CGCG 1 cut(s) 271
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 5 cut(s) 9, 271, 398, 641, 734
AclWI GGATC 4 cut(s) 387, 400, 422, 431
AcsI RAATTY 1 cut(s) 844
AfaI GTAC 4 cut(s) 111, 489, 615, 742
AfiI CCNNNNNNNGG 2 cut(s) 404, 647
AgsI TTSAA 2 cut(s) 85, 431
AjnI CCWGG 2 cut(s) 561, 748
AluBI AGCT 2 cut(s) 785, 887
AluI AGCT 2 cut(s) 785, 887
Alw26I GTCTC 2 cut(s) 114, 335
AlwI GGATC 4 cut(s) 387, 400, 422, 431
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 3 cut(s) 782, 805, 874
ApoI RAATTY 1 cut(s) 844
AseI ATTAAT 1 cut(s) 702
Asp700I GAANNNNTTC 2 cut(s) 69, 371
AspLEI GCGC 1 cut(s) 659
AsuC2I CCSGG 3 cut(s) 36, 114, 546
AsuHPI GGTGA 3 cut(s) 164, 764, 899
AsuII TTCGAA 1 cut(s) 493
BamHI GGATCC 1 cut(s) 392
BanI GGYRCC 1 cut(s) 896
BauI CACGAG 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 260
BbvI GCAGC 3 cut(s) 794, 817, 886
BccI CCATC 4 cut(s) 448, 563, 829, 874
BceAI ACGGC 2 cut(s) 545, 721
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 2 cut(s) 563, 750
BciVI GTATCC 1 cut(s) 542
BclI TGATCA 1 cut(s) 832
BcnI CCSGG 3 cut(s) 36, 114, 546
BcoDI GTCTC 2 cut(s) 114, 335
BfuI GTATCC 1 cut(s) 542
BisI GCNGC 4 cut(s) 734, 783, 806, 875
BlpI GCTNAGC 1 cut(s) 240
BlsI GCNGC 4 cut(s) 735, 784, 807, 876
Bme1390I CCNGG 5 cut(s) 36, 114, 546, 563, 750
BmiI GGNNCC 3 cut(s) 394, 507, 898
BmrFI CCNGG 5 cut(s) 36, 114, 546, 563, 750
BmsI GCATC 1 cut(s) 531
BpiI GAAGAC 1 cut(s) 260
BpmI CTGGAG 2 cut(s) 807, 846
Bpu1102I GCTNAGC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 493
BpuEI CTTGAG 1 cut(s) 229
BpuMI CCSGG 3 cut(s) 36, 114, 546
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 5 cut(s) 54, 90, 164, 388, 892
BsaWI WCCGGW 1 cut(s) 337
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 647
Bse3DI GCAATG 1 cut(s) 728
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 2 cut(s) 563, 750
BseDI CCNNGG 5 cut(s) 54, 90, 164, 388, 892
BseGI GGATG 2 cut(s) 440, 571
BseLI CCNNNNNNNGG 2 cut(s) 404, 647
BseMI GCAATG 1 cut(s) 728
BseMII CTCAG 2 cut(s) 254, 843
BseXI GCAGC 3 cut(s) 794, 817, 886
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 896
BsiSI CCGG 5 cut(s) 35, 114, 318, 338, 546
BslFI GGGAC 2 cut(s) 35, 51
BslI CCNNNNNNNGG 2 cut(s) 404, 647
BsmAI GTCTC 2 cut(s) 114, 335
BsmFI GGGAC 2 cut(s) 35, 51
BsnI GGCC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 114
Bsp119I TTCGAA 1 cut(s) 493
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 5 cut(s) 22, 392, 414, 436, 832
Bsp1720I GCTNAGC 1 cut(s) 240
Bsp19I CCATGG 2 cut(s) 54, 90
BspACI CCGC 5 cut(s) 9, 271, 398, 641, 734
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 2 cut(s) 253, 844
BspEI TCCGGA 1 cut(s) 337
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 3 cut(s) 394, 507, 898
BspPI GGATC 4 cut(s) 387, 400, 422, 431
BspQI GCTCTTC 1 cut(s) 190
BspT104I TTCGAA 1 cut(s) 493
BspT107I GGYRCC 1 cut(s) 896
BspTNI GGTCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 728
BssECI CCNNGG 5 cut(s) 54, 90, 164, 388, 892
BssMI GATC 5 cut(s) 22, 392, 414, 436, 832
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 4 cut(s) 54, 90, 164, 388
Bst2BI CACGAG 1 cut(s) 125
Bst2UI CCWGG 2 cut(s) 563, 750
Bst4CI ACNGT 6 cut(s) 140, 152, 286, 681, 724, 870
Bst6I CTCTTC 2 cut(s) 190, 306
BstBI TTCGAA 1 cut(s) 493
BstC8I GCNNGC 2 cut(s) 590, 686
BstDEI CTNAG 2 cut(s) 240, 852
BstDSI CCRYGG 2 cut(s) 54, 90
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 2 cut(s) 440, 571
BstFNI CGCG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 5 cut(s) 25, 395, 417, 439, 835
BstMAI GTCTC 2 cut(s) 114, 335
BstMBI GATC 5 cut(s) 22, 392, 414, 436, 832
BstMWI GCNNNNNNNGC 3 cut(s) 94, 103, 598
BstNI CCWGG 2 cut(s) 563, 750
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 5 cut(s) 34, 112, 544, 561, 748
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 794, 817, 886
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
BsuI GTATCC 1 cut(s) 542
BsuRI GGCC 1 cut(s) 279
BtgI CCRYGG 2 cut(s) 54, 90
BtsCI GGATG 2 cut(s) 440, 571
BtsIMutI CAGTG 1 cut(s) 686
Cac8I GCNNGC 2 cut(s) 590, 686
CfoI GCGC 1 cut(s) 659
Csp6I GTAC 4 cut(s) 110, 488, 614, 741
CviAII CATG 8 cut(s) 17, 55, 91, 98, 401, 418, 422, 696
CviJI RGCY 6 cut(s) 88, 279, 360, 408, 785, 887
CviKI_1 RGCY 6 cut(s) 88, 279, 360, 408, 785, 887
CviQI GTAC 4 cut(s) 110, 488, 614, 741
DdeI CTNAG 2 cut(s) 240, 852
DpnI GATC 5 cut(s) 24, 394, 416, 438, 834
DpnII GATC 5 cut(s) 22, 392, 414, 436, 832
Eam1104I CTCTTC 2 cut(s) 190, 306
EarI CTCTTC 2 cut(s) 190, 306
Eco130I CCWWGG 4 cut(s) 54, 90, 164, 388
Eco31I GGTCTC 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 561, 748
EcoT14I CCWWGG 4 cut(s) 54, 90, 164, 388
EcoT22I ATGCAT 3 cut(s) 423, 634, 701
ErhI CCWWGG 4 cut(s) 54, 90, 164, 388
FaeI CATG 8 cut(s) 20, 58, 94, 101, 404, 421, 425, 699
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 2 cut(s) 35, 51
FatI CATG 8 cut(s) 16, 54, 90, 97, 400, 417, 421, 695
FauI CCCGC 2 cut(s) 264, 405
FbaI TGATCA 1 cut(s) 832
FblI GTMKAC 1 cut(s) 932
Fnu4HI GCNGC 4 cut(s) 734, 783, 806, 875
FokI GGATG 2 cut(s) 427, 578
Fsp4HI GCNGC 4 cut(s) 734, 783, 806, 875
GlaI GCGC 1 cut(s) 658
GluI GCNGC 4 cut(s) 734, 783, 806, 875
GsuI CTGGAG 2 cut(s) 807, 846
HaeIII GGCC 1 cut(s) 279
HapII CCGG 5 cut(s) 35, 114, 318, 338, 546
HhaI GCGC 1 cut(s) 659
Hin1II CATG 8 cut(s) 20, 58, 94, 101, 404, 421, 425, 699
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HinfI GANTC 3 cut(s) 256, 266, 314
HpaII CCGG 5 cut(s) 35, 114, 318, 338, 546
HphI GGTGA 3 cut(s) 164, 764, 899
Hpy166II GTNNAC 3 cut(s) 488, 741, 933
Hpy188I TCNGA 2 cut(s) 290, 853
Hpy188III TCNNGA 3 cut(s) 338, 764, 825
Hpy8I GTNNAC 3 cut(s) 488, 741, 933
Hpy99I CGWCG 1 cut(s) 937
HpyAV CCTTC 2 cut(s) 285, 398
HpyCH4III ACNGT 6 cut(s) 140, 152, 286, 681, 724, 870
HpyCH4IV ACGT 1 cut(s) 935
HpyCH4V TGCA 8 cut(s) 97, 421, 632, 688, 699, 716, 772, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 103, 598
HpyF3I CTNAG 2 cut(s) 240, 852
HpySE526I ACGT 1 cut(s) 935
Hsp92II CATG 8 cut(s) 20, 58, 94, 101, 404, 421, 425, 699
HspAI GCGC 1 cut(s) 657
Kpn2I TCCGGA 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 5 cut(s) 22, 392, 414, 436, 832
LguI GCTCTTC 1 cut(s) 190
Lsp1109I GCAGC 3 cut(s) 794, 817, 886
LweI GCATC 1 cut(s) 531
MaeII ACGT 1 cut(s) 935
MaeIII GTNAC 2 cut(s) 140, 152
MalI GATC 5 cut(s) 24, 394, 416, 438, 834
MboI GATC 5 cut(s) 22, 392, 414, 436, 832
MboII GAAGA 9 cut(s) 71, 207, 226, 259, 262, 265, 323, 767, 872
MflI RGATCY 1 cut(s) 392
MluCI AATT 4 cut(s) 330, 553, 809, 844
MlyI GAGTC 3 cut(s) 250, 260, 323
MmeI TCCRAC 2 cut(s) 268, 392
Mph1103I ATGCAT 3 cut(s) 423, 634, 701
MroI TCCGGA 1 cut(s) 337
MroXI GAANNNNTTC 2 cut(s) 69, 371
MseI TTAA 1 cut(s) 702
MspA1I CMGCKG 2 cut(s) 9, 785
MspI CCGG 5 cut(s) 35, 114, 318, 338, 546
MspR9I CCNGG 5 cut(s) 36, 114, 546, 563, 750
MvaI CCWGG 2 cut(s) 563, 750
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 3 cut(s) 94, 103, 598
NciI CCSGG 3 cut(s) 36, 114, 546
NcoI CCATGG 2 cut(s) 54, 90
NdeII GATC 5 cut(s) 22, 392, 414, 436, 832
NlaIII CATG 8 cut(s) 20, 58, 94, 101, 404, 421, 425, 699
NlaIV GGNNCC 3 cut(s) 394, 507, 898
NmeAIII GCCGAG 1 cut(s) 873
NmuCI GTSAC 2 cut(s) 140, 152
NsiI ATGCAT 3 cut(s) 423, 634, 701
NspV TTCGAA 1 cut(s) 493
PciSI GCTCTTC 1 cut(s) 190
PdmI GAANNNNTTC 2 cut(s) 69, 371
PfoI TCCNGGA 1 cut(s) 561
PkrI GCNGC 4 cut(s) 735, 784, 807, 876
PleI GAGTC 3 cut(s) 250, 260, 322
PpsI GAGTC 3 cut(s) 250, 260, 322
PshBI ATTAAT 1 cut(s) 702
PsiI TTATAA 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 561, 748
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 561, 748
PspN4I GGNNCC 3 cut(s) 394, 507, 898
PsuI RGATCY 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 4 cut(s) 111, 489, 615, 742
RsaNI GTAC 4 cut(s) 110, 488, 614, 741
SalI GTCGAC 1 cut(s) 931
SapI GCTCTTC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 4 cut(s) 734, 783, 806, 875
Sau3AI GATC 5 cut(s) 22, 392, 414, 436, 832
SchI GAGTC 3 cut(s) 250, 260, 323
ScrFI CCNGG 5 cut(s) 36, 114, 546, 563, 750
SfaNI GCATC 1 cut(s) 531
SfuI TTCGAA 1 cut(s) 493
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 4 cut(s) 330, 553, 809, 844
SsiI CCGC 5 cut(s) 9, 271, 398, 641, 734
SspI AATATT 1 cut(s) 797
StyD4I CCNGG 5 cut(s) 34, 112, 544, 561, 748
StyI CCWWGG 4 cut(s) 54, 90, 164, 388
TaaI ACNGT 6 cut(s) 140, 152, 286, 681, 724, 870
TaiI ACGT 1 cut(s) 938
TaqI TCGA 3 cut(s) 349, 493, 932
TasI AATT 4 cut(s) 330, 553, 809, 844
TatI WGTACW 2 cut(s) 487, 613
TauI GCSGC 1 cut(s) 736
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 1 cut(s) 686
TseFI GTSAC 2 cut(s) 140, 152
TseI GCWGC 3 cut(s) 782, 805, 874
Tsp45I GTSAC 2 cut(s) 140, 152
TspDTI ATGAA 3 cut(s) 78, 417, 684
TspRI CASTG 1 cut(s) 686
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 1 cut(s) 844
XmiI GTMKAC 1 cut(s) 932
XmnI GAANNNNTTC 2 cut(s) 69, 371
Zsp2I ATGCAT 3 cut(s) 423, 634, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.