zinc-binding in reverse transcriptase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 216 |
| AarI | CACCTGC | 1 cut(s) | 1080 |
| Acc16I | TGCGCA | 1 cut(s) | 2807 |
| Acc36I | ACCTGC | 1 cut(s) | 1080 |
| AccB1I | GGYRCC | 2 cut(s) | 2450, 2919 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 230, 2447 |
| AccBSI | CCGCTC | 1 cut(s) | 205 |
| AccI | GTMKAC | 1 cut(s) | 1818 |
| AccII | CGCG | 2 cut(s) | 1284, 3202 |
| AclWI | GGATC | 4 cut(s) | 371, 552, 657, 3346 |
| AcoI | YGGCCR | 1 cut(s) | 3070 |
| AcsI | RAATTY | 9 cut(s) | 274, 413, 581, 612, 704, 1101, 1118, 2170, 3331 |
| AcuI | CTGAAG | 3 cut(s) | 357, 1833, 1905 |
| AfaI | GTAC | 6 cut(s) | 760, 2009, 2262, 2705, 2860, 3020 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 25, 230, 2447 |
| AflIII | ACRYGT | 1 cut(s) | 1149 |
| AgeI | ACCGGT | 2 cut(s) | 103, 3318 |
| AhlI | ACTAGT | 1 cut(s) | 1733 |
| AjnI | CCWGG | 5 cut(s) | 1248, 1454, 1557, 2440, 2775 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 12, 44, 689, 721 |
| Alw21I | GWGCWC | 3 cut(s) | 900, 2626, 2713 |
| Alw26I | GTCTC | 4 cut(s) | 1408, 1987, 2421, 3359 |
| Alw44I | GTGCAC | 1 cut(s) | 2709 |
| AlwI | GGATC | 4 cut(s) | 371, 552, 657, 3346 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 140, 380, 1658, 2435, 3314 |
| Ama87I | CYCGRG | 1 cut(s) | 3035 |
| AoxI | GGCC | 8 cut(s) | 1039, 1086, 1291, 1808, 2694, 2740, 3070, 3324 |
| ApaI | GGGCCC | 1 cut(s) | 1043 |
| ApaLI | GTGCAC | 1 cut(s) | 2709 |
| ApeKI | GCWGC | 8 cut(s) | 196, 265, 1868, 1945, 1948, 2353, 2432, 2681 |
| ApoI | RAATTY | 9 cut(s) | 274, 413, 581, 612, 704, 1101, 1118, 2170, 3331 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2429, 2461, 2514, 2546 |
| AsiGI | ACCGGT | 2 cut(s) | 103, 3318 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 616, 1336, 2754 |
| AspA2I | CCTAGG | 1 cut(s) | 1076 |
| AspLEI | GCGC | 3 cut(s) | 201, 1248, 2808 |
| AspS9I | GGNCC | 6 cut(s) | 1039, 1040, 1292, 1561, 2694, 2887 |
| AsuHPI | GGTGA | 7 cut(s) | 7, 324, 643, 827, 832, 1061, 3408 |
| AvaI | CYCGRG | 1 cut(s) | 3035 |
| AvaII | GGWCC | 2 cut(s) | 1561, 2887 |
| AvrII | CCTAGG | 1 cut(s) | 1076 |
| AxyI | CCTNAGG | 1 cut(s) | 737 |
| BaeGI | GKGCMC | 3 cut(s) | 72, 1043, 2713 |
| BanI | GGYRCC | 2 cut(s) | 2450, 2919 |
| BanII | GRGCYC | 2 cut(s) | 1043, 2145 |
| BbsI | GAAGAC | 3 cut(s) | 981, 993, 1587 |
| Bbv12I | GWGCWC | 3 cut(s) | 900, 2626, 2713 |
| BbvCI | CCTCAGC | 2 cut(s) | 1404, 1659 |
| BbvI | GCAGC | 8 cut(s) | 208, 252, 1855, 1935, 1957, 2365, 2444, 2668 |
| BccI | CCATC | 9 cut(s) | 224, 674, 1735, 2219, 2239, 2324, 2679, 2849, 3268 |
| BceAI | ACGGC | 1 cut(s) | 3057 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 338, 372, 1930, 1964 |
| BciT130I | CCWGG | 5 cut(s) | 1250, 1456, 1559, 2442, 2777 |
| BciVI | GTATCC | 1 cut(s) | 2955 |
| BclI | TGATCA | 1 cut(s) | 2002 |
| BcoDI | GTCTC | 4 cut(s) | 1408, 1987, 2421, 3359 |
| BcuI | ACTAGT | 1 cut(s) | 1733 |
| BfaI | CTAG | 4 cut(s) | 1077, 1313, 1734, 2315 |
| BfmI | CTRYAG | 6 cut(s) | 266, 553, 1214, 1869, 1949, 2256 |
| BfoI | RGCGCY | 1 cut(s) | 202 |
| BfuAI | ACCTGC | 1 cut(s) | 1080 |
| BfuI | GTATCC | 1 cut(s) | 2955 |
| BglII | AGATCT | 2 cut(s) | 2308, 3001 |
| BlnI | CCTAGG | 1 cut(s) | 1076 |
| Bme1390I | CCNGG | 5 cut(s) | 1250, 1456, 1559, 2442, 2777 |
| Bme18I | GGWCC | 2 cut(s) | 1561, 2887 |
| BmeT110I | CYCGRG | 1 cut(s) | 3035 |
| BmgT120I | GGNCC | 6 cut(s) | 1039, 1040, 1292, 1561, 2694, 2887 |
| BmiI | GGNNCC | 5 cut(s) | 1041, 2452, 2888, 2921, 3267 |
| BmrFI | CCNGG | 5 cut(s) | 1250, 1456, 1559, 2442, 2777 |
| BmrI | ACTGGG | 1 cut(s) | 988 |
| BmuI | ACTGGG | 1 cut(s) | 988 |
| BpiI | GAAGAC | 3 cut(s) | 981, 993, 1587 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1404, 1659, 1934 |
| BpuEI | CTTGAG | 5 cut(s) | 209, 314, 1700, 2885, 3305 |
| BsaI | GGTCTC | 1 cut(s) | 3359 |
| BsaWI | WCCGGW | 2 cut(s) | 103, 3318 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 25, 230, 2447 |
| Bse118I | RCCGGY | 2 cut(s) | 103, 3318 |
| Bse1I | ACTGG | 5 cut(s) | 994, 1534, 1779, 2512, 2791 |
| Bse21I | CCTNAGG | 1 cut(s) | 737 |
| Bse3DI | GCAATG | 2 cut(s) | 315, 1245 |
| BseBI | CCWGG | 5 cut(s) | 1250, 1456, 1559, 2442, 2777 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 25, 230, 2447 |
| BseMI | GCAATG | 2 cut(s) | 315, 1245 |
| BseNI | ACTGG | 5 cut(s) | 994, 1534, 1779, 2512, 2791 |
| BseRI | GAGGAG | 4 cut(s) | 1436, 1676, 1706, 2121 |
| BseSI | GKGCMC | 3 cut(s) | 72, 1043, 2713 |
| BseXI | GCAGC | 8 cut(s) | 208, 252, 1855, 1935, 1957, 2365, 2444, 2668 |
| BseYI | CCCAGC | 4 cut(s) | 223, 1294, 2356, 3116 |
| Bsh1236I | CGCG | 2 cut(s) | 1284, 3202 |
| Bsh1285I | CGRYCG | 1 cut(s) | 352 |
| BshFI | GGCC | 8 cut(s) | 1041, 1088, 1293, 1810, 2696, 2742, 3072, 3326 |
| BshNI | GGYRCC | 2 cut(s) | 2450, 2919 |
| BshTI | ACCGGT | 2 cut(s) | 103, 3318 |
| BsiEI | CGRYCG | 1 cut(s) | 352 |
| BsiHKAI | GWGCWC | 3 cut(s) | 900, 2626, 2713 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3035 |
| BsiSI | CCGG | 2 cut(s) | 104, 3319 |
| BslFI | GGGAC | 1 cut(s) | 3325 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 25, 230, 2447 |
| BsmAI | GTCTC | 4 cut(s) | 1408, 1987, 2421, 3359 |
| BsmBI | CGTCTC | 1 cut(s) | 1408 |
| BsmFI | GGGAC | 1 cut(s) | 3325 |
| BsmI | GAATGC | 2 cut(s) | 1759, 1974 |
| BsnI | GGCC | 8 cut(s) | 1041, 1088, 1293, 1810, 2696, 2742, 3072, 3326 |
| Bso31I | GGTCTC | 1 cut(s) | 3359 |
| BsoBI | CYCGRG | 1 cut(s) | 3035 |
| Bsp120I | GGGCCC | 1 cut(s) | 1039 |
| Bsp1286I | GDGCHC | 6 cut(s) | 72, 900, 1043, 2145, 2626, 2713 |
| Bsp1407I | TGTACA | 1 cut(s) | 3018 |
| Bsp19I | CCATGG | 2 cut(s) | 1473, 2145 |
| BspANI | GGCC | 8 cut(s) | 1041, 1088, 1293, 1810, 2696, 2742, 3072, 3326 |
| BspFNI | CGCG | 2 cut(s) | 1284, 3202 |
| BspHI | TCATGA | 3 cut(s) | 585, 1018, 3085 |
| BspLI | GGNNCC | 5 cut(s) | 1041, 2452, 2888, 2921, 3267 |
| BspMAI | CTGCAG | 4 cut(s) | 270, 1873, 1953, 2260 |
| BspMI | ACCTGC | 1 cut(s) | 1080 |
| BspPI | GGATC | 4 cut(s) | 371, 552, 657, 3346 |
| BspT107I | GGYRCC | 2 cut(s) | 2450, 2919 |
| BspTNI | GGTCTC | 1 cut(s) | 3359 |
| BsrBI | CCGCTC | 1 cut(s) | 205 |
| BsrDI | GCAATG | 2 cut(s) | 315, 1245 |
| BsrFI | RCCGGY | 2 cut(s) | 103, 3318 |
| BsrGI | TGTACA | 1 cut(s) | 3018 |
| BsrI | ACTGG | 5 cut(s) | 994, 1534, 1779, 2512, 2791 |
| BssAI | RCCGGY | 2 cut(s) | 103, 3318 |
| BssT1I | CCWWGG | 7 cut(s) | 19, 531, 1035, 1076, 1473, 2145, 2454 |
| Bst2UI | CCWGG | 5 cut(s) | 1250, 1456, 1559, 2442, 2777 |
| Bst6I | CTCTTC | 4 cut(s) | 723, 917, 2257, 2985 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1930, 2124 |
| BstAUI | TGTACA | 1 cut(s) | 3018 |
| BstDSI | CCRYGG | 2 cut(s) | 1473, 2145 |
| BstFNI | CGCG | 2 cut(s) | 1284, 3202 |
| BstH2I | RGCGCY | 1 cut(s) | 202 |
| BstHHI | GCGC | 3 cut(s) | 201, 1248, 2808 |
| BstMAI | GTCTC | 4 cut(s) | 1408, 1987, 2421, 3359 |
| BstMCI | CGRYCG | 1 cut(s) | 352 |
| BstNI | CCWGG | 5 cut(s) | 1250, 1456, 1559, 2442, 2777 |
| BstNSI | RCATGY | 6 cut(s) | 302, 1153, 2014, 2122, 2365, 2398 |
| BstSCI | CCNGG | 5 cut(s) | 1248, 1454, 1557, 2440, 2775 |
| BstSFI | CTRYAG | 6 cut(s) | 266, 553, 1214, 1869, 1949, 2256 |
| BstSLI | GKGCMC | 3 cut(s) | 72, 1043, 2713 |
| BstUI | CGCG | 2 cut(s) | 1284, 3202 |
| BstV1I | GCAGC | 8 cut(s) | 208, 252, 1855, 1935, 1957, 2365, 2444, 2668 |
| BstV2I | GAAGAC | 3 cut(s) | 981, 993, 1587 |
| BstX2I | RGATCY | 4 cut(s) | 376, 662, 2308, 3001 |
| BstYI | RGATCY | 4 cut(s) | 376, 662, 2308, 3001 |
| Bsu36I | CCTNAGG | 1 cut(s) | 737 |
| BsuI | GTATCC | 1 cut(s) | 2955 |
| BsuRI | GGCC | 8 cut(s) | 1041, 1088, 1293, 1810, 2696, 2742, 3072, 3326 |
| BtgI | CCRYGG | 2 cut(s) | 1473, 2145 |
| BtsI | GCAGTG | 3 cut(s) | 1958, 2711, 3111 |
| BtsIMutI | CAGTG | 8 cut(s) | 141, 1505, 1958, 2326, 2366, 2711, 2713, 3111 |
| BveI | ACCTGC | 1 cut(s) | 1080 |
| CaiI | CAGNNNCTG | 5 cut(s) | 140, 380, 1658, 2435, 3314 |
| CciI | TCATGA | 3 cut(s) | 585, 1018, 3085 |
| CfoI | GCGC | 3 cut(s) | 201, 1248, 2808 |
| Cfr10I | RCCGGY | 2 cut(s) | 103, 3318 |
| Cfr13I | GGNCC | 6 cut(s) | 1039, 1040, 1292, 1561, 2694, 2887 |
| CseI | GACGC | 1 cut(s) | 3191 |
| Csp6I | GTAC | 6 cut(s) | 759, 2008, 2261, 2704, 2859, 3019 |
| CspAI | ACCGGT | 2 cut(s) | 103, 3318 |
| CviQI | GTAC | 6 cut(s) | 759, 2008, 2261, 2704, 2859, 3019 |
| EaeI | YGGCCR | 1 cut(s) | 3070 |
| Eam1104I | CTCTTC | 4 cut(s) | 723, 917, 2257, 2985 |
| EarI | CTCTTC | 4 cut(s) | 723, 917, 2257, 2985 |
| Eco130I | CCWWGG | 7 cut(s) | 19, 531, 1035, 1076, 1473, 2145, 2454 |
| Eco147I | AGGCCT | 1 cut(s) | 1088 |
| Eco24I | GRGCYC | 2 cut(s) | 1043, 2145 |
| Eco31I | GGTCTC | 1 cut(s) | 3359 |
| Eco32I | GATATC | 1 cut(s) | 3063 |
| Eco47I | GGWCC | 2 cut(s) | 1561, 2887 |
| Eco57I | CTGAAG | 3 cut(s) | 357, 1833, 1905 |
| Eco81I | CCTNAGG | 1 cut(s) | 737 |
| Eco88I | CYCGRG | 1 cut(s) | 3035 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1040, 2694, 2887 |
| EcoRI | GAATTC | 3 cut(s) | 581, 612, 3331 |
| EcoRII | CCWGG | 5 cut(s) | 1248, 1454, 1557, 2440, 2775 |
| EcoRV | GATATC | 1 cut(s) | 3063 |
| EcoT14I | CCWWGG | 7 cut(s) | 19, 531, 1035, 1076, 1473, 2145, 2454 |
| EcoT22I | ATGCAT | 1 cut(s) | 2568 |
| EcoT38I | GRGCYC | 2 cut(s) | 1043, 2145 |
| ErhI | CCWWGG | 7 cut(s) | 19, 531, 1035, 1076, 1473, 2145, 2454 |
| Esp3I | CGTCTC | 1 cut(s) | 1408 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1321, 1353, 2919, 2951 |
| FaqI | GGGAC | 1 cut(s) | 3325 |
| FauI | CCCGC | 5 cut(s) | 210, 291, 1277, 2123, 3207 |
| FauNDI | CATATG | 1 cut(s) | 3349 |
| FbaI | TGATCA | 1 cut(s) | 2002 |
| FblI | GTMKAC | 1 cut(s) | 1818 |
| FriOI | GRGCYC | 2 cut(s) | 1043, 2145 |
| FspBI | CTAG | 4 cut(s) | 1077, 1313, 1734, 2315 |
| FspI | TGCGCA | 1 cut(s) | 2807 |
| GlaI | GCGC | 3 cut(s) | 200, 1247, 2807 |
| GsaI | CCCAGC | 4 cut(s) | 227, 1298, 2360, 3120 |
| HaeII | RGCGCY | 1 cut(s) | 202 |
| HaeIII | GGCC | 8 cut(s) | 1041, 1088, 1293, 1810, 2696, 2742, 3072, 3326 |
| HapII | CCGG | 2 cut(s) | 104, 3319 |
| HgaI | GACGC | 1 cut(s) | 3191 |
| HhaI | GCGC | 3 cut(s) | 201, 1248, 2808 |
| Hin6I | GCGC | 3 cut(s) | 199, 1246, 2806 |
| HinP1I | GCGC | 3 cut(s) | 199, 1246, 2806 |
| HincII | GTYRAC | 2 cut(s) | 1546, 3206 |
| HindII | GTYRAC | 2 cut(s) | 1546, 3206 |
| HindIII | AAGCTT | 6 cut(s) | 41, 185, 671, 2024, 2534, 2541 |
| HinfI | GANTC | 8 cut(s) | 131, 634, 1826, 2249, 2279, 2606, 2798, 3170 |
| HpaII | CCGG | 2 cut(s) | 104, 3319 |
| HphI | GGTGA | 7 cut(s) | 7, 324, 643, 827, 832, 1061, 3408 |
| Hpy166II | GTNNAC | 6 cut(s) | 332, 1546, 1819, 2711, 3021, 3206 |
| Hpy8I | GTNNAC | 6 cut(s) | 332, 1546, 1819, 2711, 3021, 3206 |
| HpyAV | CCTTC | 5 cut(s) | 408, 1326, 1697, 1855, 2944 |
| HspAI | GCGC | 3 cut(s) | 199, 1246, 2806 |
| Ksp22I | TGATCA | 1 cut(s) | 2002 |
| LmnI | GCTCC | 9 cut(s) | 225, 496, 895, 1522, 1663, 1693, 2601, 2760, 3271 |
| Lsp1109I | GCAGC | 8 cut(s) | 208, 252, 1855, 1935, 1957, 2365, 2444, 2668 |
| MaeI | CTAG | 4 cut(s) | 1077, 1313, 1734, 2315 |
| MaeIII | GTNAC | 3 cut(s) | 2364, 3382, 3396 |
| MbiI | CCGCTC | 1 cut(s) | 205 |
| MfeI | CAATTG | 1 cut(s) | 475 |
| MflI | RGATCY | 4 cut(s) | 376, 662, 2308, 3001 |
| MhlI | GDGCHC | 6 cut(s) | 72, 900, 1043, 2145, 2626, 2713 |
| MlyI | GAGTC | 2 cut(s) | 2243, 2807 |
| MmeI | TCCRAC | 2 cut(s) | 2457, 3202 |
| Mph1103I | ATGCAT | 1 cut(s) | 2568 |
| MroXI | GAANNNNTTC | 3 cut(s) | 616, 1336, 2754 |
| MseI | TTAA | 5 cut(s) | 891, 912, 2538, 2769, 3009 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1358, 2409, 2676 |
| MspA1I | CMGCKG | 5 cut(s) | 227, 1883, 1948, 2356, 2435 |
| MspI | CCGG | 2 cut(s) | 104, 3319 |
| MspR9I | CCNGG | 5 cut(s) | 1250, 1456, 1559, 2442, 2777 |
| MunI | CAATTG | 1 cut(s) | 475 |
| Mva1269I | GAATGC | 2 cut(s) | 1759, 1974 |
| MvaI | CCWGG | 5 cut(s) | 1250, 1456, 1559, 2442, 2777 |
| MvnI | CGCG | 2 cut(s) | 1284, 3202 |
| NcoI | CCATGG | 2 cut(s) | 1473, 2145 |
| NdeI | CATATG | 1 cut(s) | 3349 |
| NlaIV | GGNNCC | 5 cut(s) | 1041, 2452, 2888, 2921, 3267 |
| NmeAIII | GCCGAG | 1 cut(s) | 317 |
| NmuCI | GTSAC | 2 cut(s) | 2364, 3382 |
| NsbI | TGCGCA | 1 cut(s) | 2807 |
| NsiI | ATGCAT | 1 cut(s) | 2568 |
| NspI | RCATGY | 6 cut(s) | 302, 1153, 2014, 2122, 2365, 2398 |
| PaeI | GCATGC | 2 cut(s) | 2122, 2398 |
| PaeR7I | CTCGAG | 1 cut(s) | 3035 |
| PagI | TCATGA | 3 cut(s) | 585, 1018, 3085 |
| PaqCI | CACCTGC | 1 cut(s) | 1080 |
| PasI | CCCWGGG | 2 cut(s) | 1455, 2776 |
| PceI | AGGCCT | 1 cut(s) | 1088 |
| PciI | ACATGT | 1 cut(s) | 1149 |
| PctI | GAATGC | 2 cut(s) | 1759, 1974 |
| PdmI | GAANNNNTTC | 3 cut(s) | 616, 1336, 2754 |
| PfeI | GAWTC | 6 cut(s) | 131, 634, 1826, 2279, 2606, 3170 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 230, 2447 |
| PinAI | ACCGGT | 2 cut(s) | 103, 3318 |
| Ple19I | CGATCG | 1 cut(s) | 352 |
| PleI | GAGTC | 2 cut(s) | 2243, 2806 |
| PpsI | GAGTC | 2 cut(s) | 2243, 2806 |
| PpuMI | RGGWCCY | 1 cut(s) | 2887 |
| PscI | ACATGT | 1 cut(s) | 1149 |
| PsiI | TTATAA | 1 cut(s) | 216 |
| Psp5II | RGGWCCY | 1 cut(s) | 2887 |
| Psp6I | CCWGG | 5 cut(s) | 1248, 1454, 1557, 2440, 2775 |
| PspFI | CCCAGC | 4 cut(s) | 223, 1294, 2356, 3116 |
| PspGI | CCWGG | 5 cut(s) | 1248, 1454, 1557, 2440, 2775 |
| PspN4I | GGNNCC | 5 cut(s) | 1041, 2452, 2888, 2921, 3267 |
| PspOMI | GGGCCC | 1 cut(s) | 1039 |
| PspPI | GGNCC | 6 cut(s) | 1039, 1040, 1292, 1561, 2694, 2887 |
| PspPPI | RGGWCCY | 1 cut(s) | 2887 |
| PstI | CTGCAG | 4 cut(s) | 270, 1873, 1953, 2260 |
| PstNI | CAGNNNCTG | 5 cut(s) | 140, 380, 1658, 2435, 3314 |
| PsuI | RGATCY | 4 cut(s) | 376, 662, 2308, 3001 |
| PvuI | CGATCG | 1 cut(s) | 352 |
| PvuII | CAGCTG | 5 cut(s) | 227, 1883, 1948, 2356, 2435 |
| RsaI | GTAC | 6 cut(s) | 760, 2009, 2262, 2705, 2860, 3020 |
| RsaNI | GTAC | 6 cut(s) | 759, 2008, 2261, 2704, 2859, 3019 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1358, 2409, 2676 |
| SaqAI | TTAA | 5 cut(s) | 891, 912, 2538, 2769, 3009 |
| Sau96I | GGNCC | 6 cut(s) | 1039, 1040, 1292, 1561, 2694, 2887 |
| SchI | GAGTC | 2 cut(s) | 2243, 2807 |
| ScrFI | CCNGG | 5 cut(s) | 1250, 1456, 1559, 2442, 2777 |
| SduI | GDGCHC | 6 cut(s) | 72, 900, 1043, 2145, 2626, 2713 |
| SfcI | CTRYAG | 6 cut(s) | 266, 553, 1214, 1869, 1949, 2256 |
| Sfr274I | CTCGAG | 1 cut(s) | 3035 |
| SinI | GGWCC | 2 cut(s) | 1561, 2887 |
| SlaI | CTCGAG | 1 cut(s) | 3035 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1358, 2409, 2676 |
| SmlI | CTYRAG | 6 cut(s) | 188, 293, 1679, 2864, 3035, 3284 |
| SmoI | CTYRAG | 6 cut(s) | 188, 293, 1679, 2864, 3035, 3284 |
| SpeI | ACTAGT | 1 cut(s) | 1733 |
| SphI | GCATGC | 2 cut(s) | 2122, 2398 |
| SseBI | AGGCCT | 1 cut(s) | 1088 |
| SspMI | CTAG | 4 cut(s) | 1077, 1313, 1734, 2315 |
| StuI | AGGCCT | 1 cut(s) | 1088 |
| StyD4I | CCNGG | 5 cut(s) | 1248, 1454, 1557, 2440, 2775 |
| StyI | CCWWGG | 7 cut(s) | 19, 531, 1035, 1076, 1473, 2145, 2454 |
| TaqI | TCGA | 4 cut(s) | 129, 454, 610, 3036 |
| TatI | WGTACW | 4 cut(s) | 2007, 2260, 2703, 3018 |
| TauI | GCSGC | 3 cut(s) | 196, 2963, 3098 |
| TfiI | GAWTC | 6 cut(s) | 131, 634, 1826, 2279, 2606, 3170 |
| Tru1I | TTAA | 5 cut(s) | 891, 912, 2538, 2769, 3009 |
| Tru9I | TTAA | 5 cut(s) | 891, 912, 2538, 2769, 3009 |
| TscAI | CASTG | 8 cut(s) | 141, 1505, 1958, 2326, 2373, 2713, 2718, 3118 |
| TseFI | GTSAC | 2 cut(s) | 2364, 3382 |
| TseI | GCWGC | 8 cut(s) | 196, 265, 1868, 1945, 1948, 2353, 2432, 2681 |
| Tsp45I | GTSAC | 2 cut(s) | 2364, 3382 |
| TspRI | CASTG | 8 cut(s) | 141, 1505, 1958, 2326, 2373, 2713, 2718, 3118 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 230, 2447 |
| VneI | GTGCAC | 1 cut(s) | 2709 |
| VpaK11BI | GGWCC | 2 cut(s) | 1561, 2887 |
| XapI | RAATTY | 9 cut(s) | 274, 413, 581, 612, 704, 1101, 1118, 2170, 3331 |
| XceI | RCATGY | 6 cut(s) | 302, 1153, 2014, 2122, 2365, 2398 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 538, 2783 |
| XhoI | CTCGAG | 1 cut(s) | 3035 |
| XmaJI | CCTAGG | 1 cut(s) | 1076 |
| XmiI | GTMKAC | 1 cut(s) | 1818 |
| XmnI | GAANNNNTTC | 3 cut(s) | 616, 1336, 2754 |
| XspI | CTAG | 4 cut(s) | 1077, 1313, 1734, 2315 |
| Zsp2I | ATGCAT | 1 cut(s) | 2568 |