AT3G13950

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000404
Physical Location & Seq
Forward (+)
4603885 .. 4605513
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13950.1

Sequence Viewer

Length: 624 bp
ATGGAGATCAACGGTCAAGAAGGTCATCGATACGAAGAATCATCATCAGAGTGGTTCGTAAAGTATCTAAAACGTCAAGGCGATTGGTTAGAGAAAACTAGAGGGAATCTTATGGTTACAGCTACGGTTATAGCCGGTATGAGCTTTCAAGTTATGGTTAATCCTCCCGGTGGCGTATGGCAAAGTGACAATTGTTCTTTCGGAAATCAAACCGGAACCGCACCGTTTTGTAAGGGGAGAGCGGGAACTGCGGTATTGGAATATGAGAGTTCAAAGCGTATAGCGTATATTGGGATGATTATTAGCAGTACAGTGTCATTTTCTACCTCAATGAGTCTCATTCTCCTTGTCATCAGCGGTATACGACTAAGGAACCGGATGATAATGGCTATCCTCGGAACATTTATGGTGGTGGCGGTTCTTTGTATATCAGCGGCGTTCTTCTTCGCCATCGTGCTGGTTCAATCCGACGATCAAATAATTCGTTATATACTATTGATTTATGTGGGATTTTGGGTTGTATTTCCTGTTTTGATACTTTTAATCCAACTTGTTCGATTTATAGGTTGGCTTATTTGTTTCATGTGTTGTTGTTGTTGTCCACGTCGGCGACGGTTCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

207

Amino Acids

23.4

Weight (kDa)

9.07

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 28 - 153 1.8e-17 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 361
AciI CCGC 6 cut(s) 219, 242, 251, 357, 416, 434
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 3 cut(s) 149, 273, 464
AjiI CACGTC 1 cut(s) 605
AluBI AGCT 2 cut(s) 122, 144
AluI AGCT 2 cut(s) 122, 144
Alw26I GTCTC 1 cut(s) 341
AsuC2I CCSGG 1 cut(s) 168
BccI CCATC 1 cut(s) 458
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 99
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
Bme1390I CCNGG 1 cut(s) 168
BmgBI CACGTC 1 cut(s) 605
BmiI GGNNCC 3 cut(s) 217, 374, 617
BmrFI CCNGG 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 2 cut(s) 212, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 134
BseCI ATCGAT 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 2 cut(s) 300, 384
BseLI CCNNNNNNNGG 1 cut(s) 170
BshVI ATCGAT 1 cut(s) 28
BsiSI CCGG 4 cut(s) 135, 168, 213, 376
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 341
Bsp143I GATC 2 cut(s) 6, 472
BspACI CCGC 6 cut(s) 219, 242, 251, 357, 416, 434
BspDI ATCGAT 1 cut(s) 28
BspLI GGNNCC 3 cut(s) 217, 374, 617
BsrBI CCGCTC 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 2 cut(s) 6, 472
BssNAI GTATAC 1 cut(s) 362
Bst1107I GTATAC 1 cut(s) 362
Bst4CI ACNGT 5 cut(s) 14, 127, 225, 313, 615
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 2 cut(s) 300, 384
BstKTI GATC 2 cut(s) 9, 475
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 2 cut(s) 6, 472
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 457
BstZ17I GTATAC 1 cut(s) 362
Bsu15I ATCGAT 1 cut(s) 28
BsuTUI ATCGAT 1 cut(s) 28
BtrI CACGTC 1 cut(s) 605
BtsCI GGATG 2 cut(s) 300, 384
BtsIMutI CAGTG 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 134
ClaI ATCGAT 1 cut(s) 28
Csp6I GTAC 1 cut(s) 309
CviAII CATG 1 cut(s) 583
CviJI RGCY 5 cut(s) 122, 134, 144, 389, 571
CviKI_1 RGCY 5 cut(s) 122, 134, 144, 389, 571
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 1 cut(s) 368
DpnI GATC 2 cut(s) 8, 474
DpnII GATC 2 cut(s) 6, 472
FaeI CATG 1 cut(s) 586
FatI CATG 1 cut(s) 582
FauI CCCGC 1 cut(s) 235
FblI GTMKAC 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 2 cut(s) 307, 391
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 1 cut(s) 99
GluI GCNGC 1 cut(s) 435
HapII CCGG 4 cut(s) 135, 168, 213, 376
Hin1II CATG 1 cut(s) 586
HinfI GANTC 3 cut(s) 38, 106, 334
HpaII CCGG 4 cut(s) 135, 168, 213, 376
Hpy166II GTNNAC 2 cut(s) 362, 602
Hpy188I TCNGA 4 cut(s) 49, 203, 398, 469
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 2 cut(s) 362, 602
Hpy99I CGWCG 3 cut(s) 473, 609, 615
HpyAV CCTTC 1 cut(s) 14
HpyCH4III ACNGT 5 cut(s) 14, 127, 225, 313, 615
HpyCH4IV ACGT 2 cut(s) 73, 604
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 2 cut(s) 73, 604
Hsp92II CATG 1 cut(s) 586
Kzo9I GATC 2 cut(s) 6, 472
LpnPI CCDG 6 cut(s) 148, 181, 226, 389, 443, 540
MaeI CTAG 1 cut(s) 99
MaeII ACGT 2 cut(s) 73, 604
MaeIII GTNAC 2 cut(s) 115, 185
MalI GATC 2 cut(s) 8, 474
MbiI CCGCTC 1 cut(s) 242
MboI GATC 2 cut(s) 6, 472
MboII GAAGA 3 cut(s) 47, 433, 436
MfeI CAATTG 1 cut(s) 190
MluCI AATT 2 cut(s) 190, 480
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 492, 571
MnlI CCTC 4 cut(s) 95, 174, 337, 404
MseI TTAA 2 cut(s) 159, 542
MslI CAYNNNNRTG 1 cut(s) 49
MspA1I CMGCKG 2 cut(s) 357, 434
MspI CCGG 4 cut(s) 135, 168, 213, 376
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 168
NdeII GATC 2 cut(s) 6, 472
NlaIII CATG 1 cut(s) 586
NlaIV GGNNCC 3 cut(s) 217, 374, 617
NmuCI GTSAC 1 cut(s) 185
PfeI GAWTC 2 cut(s) 38, 106
PkrI GCNGC 1 cut(s) 436
PleI GAGTC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 342
PspN4I GGNNCC 3 cut(s) 217, 374, 617
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 49
SaqAI TTAA 2 cut(s) 159, 542
SatI GCNGC 1 cut(s) 435
Sau3AI GATC 2 cut(s) 6, 472
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 168
SetI ASST 7 cut(s) 25, 76, 124, 146, 329, 568, 607
SmiMI CAYNNNNRTG 1 cut(s) 49
Sse9I AATT 2 cut(s) 190, 480
SsiI CCGC 6 cut(s) 219, 242, 251, 357, 416, 434
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 5 cut(s) 14, 127, 225, 313, 615
TaiI ACGT 2 cut(s) 76, 607
TaqI TCGA 2 cut(s) 28, 556
TasI AATT 2 cut(s) 190, 480
TatI WGTACW 1 cut(s) 308
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 2 cut(s) 38, 106
Tru1I TTAA 2 cut(s) 159, 542
Tru9I TTAA 2 cut(s) 159, 542
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 571
TspRI CASTG 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 361
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.