Rw1G014920

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000404
Physical Location & Seq
Forward (+)
33232505 .. 33233341
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014920.1

Sequence Viewer

Length: 780 bp
ATGTTTGTGCAGACCATAACATACCTGATTTCACTGCCTGCTATCAGAAAGAATGTTATAAATAATATCGTTTTGGATACCTTAGAGTACGGTCCCAGAGACTTTAGAAGCATAGCAATTCAACAGATTTTGATGGACGCATGTATCAATAAAAACAAAAAAGATGAGTATGAGCAACAAGTATTCTCAACAACAGCACCTGTCTCGCCACCATCAGAATCCAGTATATACAACAAGGGTGATCGTTGGTTTGAAGAAATACGCGGCATGTTGATGGTTGTCGCAGCCATCAACCCACCAGGTGGTGTTTGGCAAGATAATGTCAGATCATTTAGCATTGAAGAAAAAAATTATTGTTCAACAGAAGACCCTTGCTATCTTGGAACTGCAGTGTTGGGAAATGTGTGGGAACCCGACATGCGGGAATTTATTAAGTACAACACCATCTGTTTTGTTGCTTCTCTCAGTGTTACCGTTTTTCTTATCAGCGGCTTTCCTCTGACAAATCGGATATGTATATGGATCTTATCAATGGCTGTGTGCATCACTATCACATTCACTGCTCTTACTTGCCTAACTGGTGTTGACTTGGTGATGCCATTTGCTGTTGCGGATGATGTTGAAAGTAAGTACAGACCATTAGGAGTTCAGGTTTGGATTGAATTGCTTGCTATGGCTGGTTTATTCCATACTTTTCTTTTTCTCACTTGGCTTGTGAAGAAGGTGAACTCCAAGTTCAGAGATAAGAGCAGGGCAAATGGTATGTCACTATGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

259

Amino Acids

29.27

Weight (kDa)

5.56

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 94 - 192 3.6e-06 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 302
AccII CGCG 1 cut(s) 264
AciI CCGC 4 cut(s) 264, 421, 489, 611
AclWI GGATC 1 cut(s) 530
AcsI RAATTY 1 cut(s) 425
AdeI CACNNNGTG 1 cut(s) 302
AfaI GTAC 3 cut(s) 89, 437, 632
AfiI CCNNNNNNNGG 2 cut(s) 302, 420
AgsI TTSAA 6 cut(s) 122, 254, 341, 360, 623, 662
AjnI CCWGG 1 cut(s) 298
Alw26I GTCTC 2 cut(s) 93, 208
AlwI GGATC 1 cut(s) 530
AlwNI CAGNNNCTG 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 1 cut(s) 749
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 3 cut(s) 251, 604, 736
AvaII GGWCC 1 cut(s) 92
BaeI ACNNNNGTAYC 2 cut(s) 127, 160
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 296
BccI CCATC 5 cut(s) 127, 220, 268, 296, 452
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BciT130I CCWGG 1 cut(s) 300
BciVI GTATCC 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 93, 208
BfmI CTRYAG 1 cut(s) 387
BfuI GTATCC 1 cut(s) 70
BisI GCNGC 3 cut(s) 265, 285, 490
BlsI GCNGC 3 cut(s) 266, 286, 491
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 94, 411
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 2 cut(s) 552, 585
BpiI GAAGAC 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 636, 666
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 420
Bse1I ACTGG 2 cut(s) 222, 583
BseBI CCWGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 2 cut(s) 302, 420
BseMII CTCAG 1 cut(s) 478
BseNI ACTGG 2 cut(s) 222, 583
BseXI GCAGC 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 302, 420
BsmAI GTCTC 2 cut(s) 93, 208
BsmFI GGGAC 1 cut(s) 78
Bsp143I GATC 3 cut(s) 241, 326, 522
BspACI CCGC 4 cut(s) 264, 421, 489, 611
BspCNI CTCAG 1 cut(s) 477
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 94, 411
BspMAI CTGCAG 1 cut(s) 391
BspPI GGATC 1 cut(s) 530
BsrI ACTGG 2 cut(s) 222, 583
BssMI GATC 3 cut(s) 241, 326, 522
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 92, 475
BstC8I GCNNGC 2 cut(s) 39, 669
BstDEI CTNAG 2 cut(s) 82, 464
BstF5I GGATG 1 cut(s) 619
BstFNI CGCG 1 cut(s) 264
BstKTI GATC 3 cut(s) 244, 329, 525
BstMAI GTCTC 2 cut(s) 93, 208
BstMBI GATC 3 cut(s) 241, 326, 522
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 3 cut(s) 144, 271, 421
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 522
BstYI RGATCY 1 cut(s) 522
BsuI GTATCC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 619
BtsI GCAGTG 3 cut(s) 32, 396, 558
BtsIMutI CAGTG 4 cut(s) 32, 396, 472, 558
Cac8I GCNNGC 2 cut(s) 39, 669
CaiI CAGNNNCTG 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 92
CseI GACGC 1 cut(s) 146
CsiI ACCWGGT 1 cut(s) 298
Csp6I GTAC 3 cut(s) 88, 436, 631
CviAII CATG 3 cut(s) 141, 268, 418
CviJI RGCY 5 cut(s) 287, 492, 536, 677, 712
CviKI_1 RGCY 5 cut(s) 287, 492, 536, 677, 712
CviQI GTAC 3 cut(s) 88, 436, 631
DdeI CTNAG 2 cut(s) 82, 464
DpnI GATC 3 cut(s) 243, 328, 524
DpnII GATC 3 cut(s) 241, 326, 522
DraIII CACNNNGTG 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 298
FaeI CATG 3 cut(s) 144, 271, 421
FaqI GGGAC 1 cut(s) 78
FatI CATG 3 cut(s) 140, 267, 417
FauI CCCGC 1 cut(s) 414
Fnu4HI GCNGC 3 cut(s) 265, 285, 490
FokI GGATG 1 cut(s) 626
Fsp4HI GCNGC 3 cut(s) 265, 285, 490
GluI GCNGC 3 cut(s) 265, 285, 490
HgaI GACGC 1 cut(s) 146
Hin1II CATG 3 cut(s) 144, 271, 421
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 1 cut(s) 218
HphI GGTGA 3 cut(s) 251, 604, 736
Hpy166II GTNNAC 2 cut(s) 586, 727
Hpy188I TCNGA 6 cut(s) 47, 217, 326, 501, 510, 740
Hpy8I GTNNAC 2 cut(s) 586, 727
HpyAV CCTTC 1 cut(s) 715
HpyCH4III ACNGT 2 cut(s) 92, 475
HpyCH4V TGCA 3 cut(s) 10, 389, 543
HpyF3I CTNAG 2 cut(s) 82, 464
Hsp92II CATG 3 cut(s) 144, 271, 421
Kzo9I GATC 3 cut(s) 241, 326, 522
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 2 cut(s) 552, 585
MabI ACCWGGT 1 cut(s) 298
MaeIII GTNAC 2 cut(s) 469, 765
MalI GATC 3 cut(s) 243, 328, 524
MboI GATC 3 cut(s) 241, 326, 522
MboII GAAGA 4 cut(s) 266, 353, 377, 730
MflI RGATCY 1 cut(s) 522
MluCI AATT 4 cut(s) 117, 349, 425, 662
MnlI CCTC 1 cut(s) 507
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 489
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 264
NdeII GATC 3 cut(s) 241, 326, 522
NlaIII CATG 3 cut(s) 144, 271, 421
NlaIV GGNNCC 2 cut(s) 94, 411
NmuCI GTSAC 1 cut(s) 765
NspI RCATGY 3 cut(s) 144, 271, 421
PfeI GAWTC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 3 cut(s) 266, 286, 491
PsiI TTATAA 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 2 cut(s) 94, 411
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 391
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 522
RsaI GTAC 3 cut(s) 89, 437, 632
RsaNI GTAC 3 cut(s) 88, 436, 631
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 3 cut(s) 265, 285, 490
Sau3AI GATC 3 cut(s) 241, 326, 522
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 300
SetI ASST 6 cut(s) 27, 83, 202, 304, 654, 726
SexAI ACCWGGT 1 cut(s) 298
SfaNI GCATC 2 cut(s) 552, 585
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 4 cut(s) 117, 349, 425, 662
SsiI CCGC 4 cut(s) 264, 421, 489, 611
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 92, 475
TasI AATT 4 cut(s) 117, 349, 425, 662
TatI WGTACW 2 cut(s) 435, 630
TauI GCSGC 2 cut(s) 267, 492
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 4 cut(s) 39, 396, 472, 565
TseFI GTSAC 1 cut(s) 765
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 765
TspRI CASTG 4 cut(s) 39, 396, 472, 565
Van91I CCANNNNNTGG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 1 cut(s) 425
XceI RCATGY 3 cut(s) 144, 271, 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.