Rh7CG326800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000404
Physical Location & Seq
Forward (+)
35758442 .. 35758660
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG326800.1

Sequence Viewer

Length: 219 bp
ATGGATCCCTTGGTTTCCCTGCAAGAAGAATCAAGTGTTCTCAAGGAAAGAGTCTCAAAGCTATTGCTGAAGATTGGCATCATTAGCAGCATTGCTCAGCCTAGTGGTGAAGCTCAAGAAAGAAGGATTCCGGCCAGTGGAGAAGGAATCCAACTGGGTGGAGAGTCAAAGGGCAATGCTCATTGGTGTGGCTACCCCGATCGCATTGATGGCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.72

Weight (kDa)

5.02

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 132
AcuI CTGAAG 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 137
AluBI AGCT 2 cut(s) 61, 113
AluI AGCT 2 cut(s) 61, 113
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 119
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 99
BccI CCATC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 2 cut(s) 102, 217
BisI GCNGC 1 cut(s) 88
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 164
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 2 cut(s) 26, 99
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 135, 159
Bse3DI GCAATG 2 cut(s) 90, 181
Bse8I GATNNNNATC 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 9
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 2 cut(s) 90, 181
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 135, 159
BseXI GCAGC 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 4, 199
Bsp1720I GCTNAGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 2 cut(s) 90, 181
BsrI ACTGG 2 cut(s) 135, 159
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 2 cut(s) 4, 199
BssT1I CCWWGG 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 96
BstKTI GATC 2 cut(s) 7, 202
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 2 cut(s) 4, 199
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 84, 210
BstV1I GCAGC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 158
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 142
CviJI RGCY 5 cut(s) 61, 100, 113, 134, 192
CviKI_1 RGCY 5 cut(s) 61, 100, 113, 134, 192
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 6, 201
DpnII GATC 2 cut(s) 4, 199
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 2 cut(s) 102, 217
GluI GCNGC 1 cut(s) 88
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 131
HinfI GANTC 5 cut(s) 29, 51, 127, 147, 164
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 117, 137
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 210
HpyF3I CTNAG 1 cut(s) 96
Kzo9I GATC 2 cut(s) 4, 199
LpnPI CCDG 4 cut(s) 32, 140, 144, 148
Lsp1109I GCAGC 1 cut(s) 99
LweI GCATC 1 cut(s) 87
MaeI CTAG 2 cut(s) 102, 217
MalI GATC 2 cut(s) 6, 201
MboI GATC 2 cut(s) 4, 199
MboII GAAGA 2 cut(s) 38, 82
MflI RGATCY 1 cut(s) 4
MlyI GAGTC 2 cut(s) 60, 173
MmeI TCCRAC 1 cut(s) 175
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 84, 210
NdeII GATC 2 cut(s) 4, 199
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 3 cut(s) 29, 127, 147
PkrI GCNGC 1 cut(s) 89
Ple19I CGATCG 1 cut(s) 202
PleI GAGTC 2 cut(s) 59, 172
PpsI GAGTC 2 cut(s) 59, 172
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
PvuI CGATCG 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 186
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 4, 199
SchI GAGTC 2 cut(s) 60, 173
SetI ASST 2 cut(s) 63, 115
SfaNI GCATC 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 2 cut(s) 41, 114
SmoI CTYRAG 2 cut(s) 41, 114
SspMI CTAG 2 cut(s) 102, 217
StyI CCWWGG 1 cut(s) 9
TfiI GAWTC 3 cut(s) 29, 127, 147
TscAI CASTG 1 cut(s) 142
TseI GCWGC 1 cut(s) 87
TspRI CASTG 1 cut(s) 142
XspI CTAG 2 cut(s) 102, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.